| Back to Workflows build report for BioC 3.18 |
This page was generated on 2023-09-22 14:00:11 -0400 (Fri, 22 Sep 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4659 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4394 |
| lconway | macOS 12.6.5 Monterey | x86_64 | 4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" | 4408 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 29/30 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| TCGAWorkflow 1.25.2 (landing page) Tiago Chedraoui Silva
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK |  | |||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | |||||||||
| lconway | macOS 12.6.5 Monterey / x86_64 | OK | ERROR | |||||||||
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To the developers/maintainers of the TCGAWorkflow package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: TCGAWorkflow |
| Version: 1.25.2 |
| Command: F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL TCGAWorkflow |
| StartedAt: 2023-09-22 11:02:21 -0400 (Fri, 22 Sep 2023) |
| EndedAt: 2023-09-22 11:03:43 -0400 (Fri, 22 Sep 2023) |
| EllapsedTime: 81.4 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL TCGAWorkflow ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.18-bioc/R/library' * installing *source* package 'TCGAWorkflow' ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::intersect' by 'dplyr::intersect' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::union' by 'dplyr::union' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::setdiff' by 'dplyr::setdiff' when loading 'TCGAWorkflow' Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::intersect' by 'dplyr::intersect' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::union' by 'dplyr::union' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::setdiff' by 'dplyr::setdiff' when loading 'TCGAWorkflow' Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow' ** testing if installed package can be loaded from final location Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::intersect' by 'dplyr::intersect' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::union' by 'dplyr::union' when loading 'TCGAWorkflow' Warning: replacing previous import 'GenomicRanges::setdiff' by 'dplyr::setdiff' when loading 'TCGAWorkflow' Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow' ** testing if installed package keeps a record of temporary installation path * DONE (TCGAWorkflow)