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This page was generated on 2024-05-03 11:39:00 -0400 (Fri, 03 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4660
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4391
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4422
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2212/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
wppi 1.13.0  (landing page)
Ana Galhoz
Snapshot Date: 2024-05-01 14:05:06 -0400 (Wed, 01 May 2024)
git_url: https://git.bioconductor.org/packages/wppi
git_branch: devel
git_last_commit: 65eba9a
git_last_commit_date: 2024-04-30 11:33:03 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  NO, package depends on 'OmnipathR' which is not available
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'OmnipathR' which is not available
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'OmnipathR' which is not available
kjohnson1macOS 13.6.6 Ventura / arm64see weekly results here

INSTALL results for wppi on merida1


To the developers/maintainers of the wppi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/wppi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: wppi
Version: 1.13.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL wppi
StartedAt: 2024-05-01 16:03:17 -0400 (Wed, 01 May 2024)
EndedAt: 2024-05-01 16:03:40 -0400 (Wed, 01 May 2024)
EllapsedTime: 22.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL wppi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘wppi’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
[2024-05-01 16:03:24] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-01 16:03:24] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-01 16:03:24] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-05-01 16:03:24] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-05-01 16:03:24] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-05-01 16:03:24] [TRACE]   [OmnipathR] Contains 1 files.
[2024-05-01 16:03:24] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-05-01 16:03:24] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-01 16:03:24] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-01 16:03:24] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-05-01 16:03:24] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-05-01 16:03:24] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-05-01 16:03:24] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-01 16:03:24] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-05-01 16:03:24] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-01 16:03:24] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-05-01 16:03:24] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-01 16:03:24] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-05-01 16:03:24] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-01 16:03:24] [TRACE]   [OmnipathR] Cache locked: FALSE
Note: wrong number of arguments to '/' 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2024-05-01 16:03:32] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-01 16:03:32] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-01 16:03:32] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-05-01 16:03:32] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-05-01 16:03:32] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-05-01 16:03:32] [TRACE]   [OmnipathR] Contains 1 files.
[2024-05-01 16:03:32] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-05-01 16:03:32] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-01 16:03:32] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-01 16:03:32] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-05-01 16:03:32] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-05-01 16:03:32] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-05-01 16:03:32] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-01 16:03:32] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-05-01 16:03:32] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-01 16:03:32] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-05-01 16:03:32] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-01 16:03:32] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-05-01 16:03:33] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-01 16:03:33] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2024-05-01 16:03:39] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-01 16:03:39] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-01 16:03:39] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-05-01 16:03:39] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-05-01 16:03:39] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-05-01 16:03:39] [TRACE]   [OmnipathR] Contains 1 files.
[2024-05-01 16:03:39] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-05-01 16:03:39] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-05-01 16:03:39] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-01 16:03:39] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-05-01 16:03:39] [TRACE]   [OmnipathR] Pandoc version: `2.7.3`.
[2024-05-01 16:03:39] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-05-01 16:03:39] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-01 16:03:39] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-05-01 16:03:39] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-01 16:03:39] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-05-01 16:03:39] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-01 16:03:39] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-05-01 16:03:39] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-05-01 16:03:39] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (wppi)