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This page was generated on 2023-02-04 11:06:36 -0500 (Sat, 04 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" 4483
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-01-10 r83596 ucrt) -- "Unsuffered Consequences" 4249
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" 4272
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for supraHex on merida1


To the developers/maintainers of the supraHex package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/supraHex.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1982/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
supraHex 1.37.0  (landing page)
Hai Fang
Snapshot Date: 2023-02-03 14:00:22 -0500 (Fri, 03 Feb 2023)
git_url: https://git.bioconductor.org/packages/supraHex
git_branch: master
git_last_commit: a854df8
git_last_commit_date: 2022-11-01 11:08:35 -0500 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    NA  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: supraHex
Version: 1.37.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:supraHex.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings supraHex_1.37.0.tar.gz
StartedAt: 2023-02-04 07:15:44 -0500 (Sat, 04 Feb 2023)
EndedAt: 2023-02-04 07:19:45 -0500 (Sat, 04 Feb 2023)
EllapsedTime: 241.5 seconds
RetCode: 0
Status:   OK  
CheckDir: supraHex.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:supraHex.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings supraHex_1.37.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.17-bioc/meat/supraHex.Rcheck’
* using R Under development (unstable) (2023-01-10 r83596)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* R was compiled by
    Apple clang version 12.0.0 (clang-1200.0.32.29)
    GNU Fortran (GCC) 8.2.0
* running under: macOS Mojave 10.14.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.37.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
visCompReorder 14.535  0.192  18.695
sCompReorder   10.725  0.144  13.607
visHexMapping  10.322  0.091  13.279
visHexPattern   9.835  0.154  12.754
visHexMulComp   9.274  0.069  12.066
visHexBarplot   8.698  0.071  11.128
sWriteData      3.870  0.045   5.318
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

supraHex.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL supraHex
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3/Resources/library’
* installing *source* package ‘supraHex’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (supraHex)

Tests output


Example timings

supraHex.Rcheck/supraHex-Ex.timings

nameusersystemelapsed
sBMH0.1220.0110.173
sCompReorder10.725 0.14413.607
sDistance3.3700.0134.207
sDmat3.1330.0133.960
sDmatCluster3.3630.0174.202
sDmatMinima3.1330.0124.016
sHexDist0.0140.0000.014
sHexGrid0.0110.0000.012
sHexGridVariant0.0030.0000.004
sHexPolygon0.9840.0031.219
sInitial0.0120.0010.013
sMapOverlay3.2300.0214.093
sNeighAny0.0190.0000.024
sNeighDirect0.0150.0000.019
sPipeline0.0010.0000.003
sTopology0.0760.0100.108
sTrainBatch0.0820.0010.106
sTrainSeq0.7300.0080.937
sTrainology0.0130.0010.017
sWriteData3.8700.0455.318
visColoralpha0.0060.0000.007
visColorbar0.0460.0000.047
visColormap0.0060.0010.006
visCompReorder14.535 0.19218.695
visDmatCluster0.0000.0010.000
visDmatHeatmap0.0000.0000.001
visHeatmap0.1920.0030.248
visHeatmapAdv0.8580.0091.128
visHexAnimate0.0020.0010.002
visHexBarplot 8.698 0.07111.128
visHexComp3.1970.0154.065
visHexGrid3.2280.0144.175
visHexMapping10.322 0.09113.279
visHexMulComp 9.274 0.06912.066
visHexPattern 9.835 0.15412.754
visKernels0.0390.0090.059
visTreeBSclust0.0000.0000.001
visTreeBootstrap0.0010.0010.001
visVp0.0320.0090.050