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This page was generated on 2024-05-10 11:36:37 -0400 (Fri, 10 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4662
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4393
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4424
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1666/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
recount3 1.15.0  (landing page)
Leonardo Collado-Torres
Snapshot Date: 2024-05-08 14:05:06 -0400 (Wed, 08 May 2024)
git_url: https://git.bioconductor.org/packages/recount3
git_branch: devel
git_last_commit: cbdf974
git_last_commit_date: 2024-04-30 11:28:09 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64see weekly results here

BUILD results for recount3 on nebbiolo2


To the developers/maintainers of the recount3 package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/recount3.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: recount3
Version: 1.15.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data recount3
StartedAt: 2024-05-08 18:50:46 -0400 (Wed, 08 May 2024)
EndedAt: 2024-05-08 18:51:32 -0400 (Wed, 08 May 2024)
EllapsedTime: 45.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data recount3
###
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* checking for file ‘recount3/DESCRIPTION’ ... OK
* preparing ‘recount3’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘recount3-quickstart.Rmd’ using rmarkdown

Quitting from lines  at lines 161-176 [quick_example] (recount3-quickstart.Rmd)
Error: processing vignette 'recount3-quickstart.Rmd' failed with diagnostics:
'recount3_url' is not a valid supported URL since it's missing the URL/<organism>/homes_index text file or 'recount3_url' is not an existing directory in your file system.
--- failed re-building ‘recount3-quickstart.Rmd’

SUMMARY: processing the following file failed:
  ‘recount3-quickstart.Rmd’

Error: Vignette re-building failed.
Execution halted