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This page was generated on 2024-05-08 11:37:22 -0400 (Wed, 08 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4662
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4393
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4424
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1615/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rain 1.39.0  (landing page)
Paul F. Thaben
Snapshot Date: 2024-05-06 14:05:07 -0400 (Mon, 06 May 2024)
git_url: https://git.bioconductor.org/packages/rain
git_branch: devel
git_last_commit: 751011b
git_last_commit_date: 2024-04-30 10:38:41 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64see weekly results here

BUILD results for rain on palomino4


To the developers/maintainers of the rain package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rain.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: rain
Version: 1.39.0
Command: chmod a+r rain -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data rain
StartedAt: 2024-05-06 20:43:32 -0400 (Mon, 06 May 2024)
EndedAt: 2024-05-06 20:44:01 -0400 (Mon, 06 May 2024)
EllapsedTime: 28.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r rain -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data rain
###
##############################################################################
##############################################################################


* checking for file 'rain/DESCRIPTION' ... OK
* preparing 'rain':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'rain.Rnw' using Sweave
Loading required package: lattice
Loading required package: rain
Loading required package: gmp

Attaching package: 'gmp'

The following objects are masked from 'package:base':

    %*%, apply, crossprod, matrix, tcrossprod

Loading required package: multtest
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:gmp':

    which.max, which.min

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
    union, unique, unsplit, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 1033
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "rain.tex" ' had status 1033
Error: processing vignette 'rain.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'rain.pdf' for vignette with name 'rain' and engine 'utils::Sweave'. The following files exist in working directory 'F:\biocbuild\bbs-3.20-bioc\tmpdir\RtmpOIhrzS\Rbuildd48272d3942\rain\vignettes': 'rain-002.pdf' (7524 bytes), 'rain-005.pdf' (12763 bytes), 'rain-006.pdf' (4067 bytes), 'rain-concordance.tex' (227 bytes), 'rain.Rnw' (10440 bytes), 'rain.tex' (11315 bytes)
--- failed re-building 'rain.Rnw'

SUMMARY: processing the following file failed:
  'rain.Rnw'

Error: Vignette re-building failed.
Execution halted