Back to Multiple platform build/check report for BioC 3.16 |
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This page was generated on 2022-06-24 11:06:56 -0400 (Fri, 24 Jun 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" | 4331 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" | 4136 |
lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" | 4147 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the pathview package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pathview.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1405/2118 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
pathview 1.37.0 (landing page) Weijun Luo
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | ||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.2.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
Package: pathview |
Version: 1.37.0 |
Command: chmod a+r pathview -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data pathview |
StartedAt: 2022-06-23 20:18:18 -0400 (Thu, 23 Jun 2022) |
EndedAt: 2022-06-23 20:18:46 -0400 (Thu, 23 Jun 2022) |
EllapsedTime: 28.9 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r pathview -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data pathview ### ############################################################################## ############################################################################## * checking for file 'pathview/DESCRIPTION' ... OK * preparing 'pathview': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'pathview.Rnw' using Sweave ############################################################################## Pathview is an open source software package distributed under GNU General Public License version 3 (GPLv3). Details of GPLv3 is available at http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to formally cite the original Pathview paper (not just mention it) in publications or products. For details, do citation("pathview") within R. The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG license agreement (details at http://www.kegg.jp/kegg/legal.html). ############################################################################## Info: Downloading xml files for hsa04110, 1/1 pathways.. Warning in download.file(xml.url, xml.target, quiet = T) : URL 'https://rest.kegg.jp/get/hsa04110/kgml': status was 'Failure when receiving data from the peer' Warning: Download of hsa04110 xml file failed! This pathway may not exist! Info: Downloading png files for hsa04110, 1/1 pathways.. Warning: Download of hsa04110 png file failed! This pathway may not exist! Warning: Failed to download KEGG xml/png files, hsa04110 skipped! Error: processing vignette 'pathview.Rnw' failed with diagnostics: chunk 15 (label = kegg.native) Error in pv.out$plot.data.gene : $ operator is invalid for atomic vectors --- failed re-building 'pathview.Rnw' SUMMARY: processing the following file failed: 'pathview.Rnw' Error: Vignette re-building failed. Execution halted