Multiple platform build/check report for BioC 3.19 - BUILD results for openCyto on merida1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences"	4676
palomino3	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences"	4414
merida1	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences"	4441
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences"	4417
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the openCyto package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/openCyto.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

Summary

Package: openCyto

Version: 2.15.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data openCyto

StartedAt: 2024-03-01 21:13:43 -0500 (Fri, 01 Mar 2024)

EndedAt: 2024-03-01 21:15:16 -0500 (Fri, 01 Mar 2024)

EllapsedTime: 92.4 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data openCyto
###
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* checking for file ‘openCyto/DESCRIPTION’ ... OK
* preparing ‘openCyto’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HowToAutoGating.Rmd’ using rmarkdown

Quitting from lines 44-49 [unnamed-chunk-3] (HowToAutoGating.Rmd)
Error: processing vignette 'HowToAutoGating.Rmd' failed with diagnostics:
Problem while computing aesthetics.
ℹ Error occurred in the 2nd layer.
Caused by error in `compute_aesthetics()`:
! object 'scales_add_defaults' not found
--- failed re-building ‘HowToAutoGating.Rmd’

--- re-building ‘HowToWriteCSVTemplate.Rmd’ using rmarkdown
--- finished re-building ‘HowToWriteCSVTemplate.Rmd’

--- re-building ‘openCytoVignette.Rmd’ using knitr
2024-03-01 21:15:08.416 R[53193:915596019] XType: com.apple.fonts is not accessible.
2024-03-01 21:15:08.417 R[53193:915596019] XType: XTFontStaticRegistry is enabled.

Quitting from lines 69-71 [plot-manual-gates] (openCytoVignette.Rmd)
Error: processing vignette 'openCytoVignette.Rmd' failed with diagnostics:
attempt to apply non-function
--- failed re-building ‘openCytoVignette.Rmd’

SUMMARY: processing the following files failed:
  ‘HowToAutoGating.Rmd’ ‘openCytoVignette.Rmd’

Error: Vignette re-building failed.
Execution halted