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This page was generated on 2023-12-05 11:39:17 -0500 (Tue, 05 Dec 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_64R Under development (unstable) (2023-11-11 r85510) -- "Unsuffered Consequences" 4605
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-11-14 r85524 ucrt) -- "Unsuffered Consequences" 4346
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2023-11-11 r85510) -- "Unsuffered Consequences" 4371
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2023-11-01 r85459) -- "Unsuffered Consequences" 4258
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1432/2226HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
openCyto 2.15.0  (landing page)
Mike Jiang
Snapshot Date: 2023-12-04 14:00:14 -0500 (Mon, 04 Dec 2023)
git_url: https://git.bioconductor.org/packages/openCyto
git_branch: devel
git_last_commit: 3a74611
git_last_commit_date: 2023-10-24 09:56:24 -0500 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

INSTALL results for openCyto on kunpeng2


To the developers/maintainers of the openCyto package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/openCyto.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: openCyto
Version: 2.15.0
Command: /home/biocbuild/R/R-4.4-devel-2023.11.02/bin/R CMD INSTALL openCyto
StartedAt: 2023-12-04 20:06:58 -0000 (Mon, 04 Dec 2023)
EndedAt: 2023-12-04 20:07:39 -0000 (Mon, 04 Dec 2023)
EllapsedTime: 40.8 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
###
###   /home/biocbuild/R/R-4.4-devel-2023.11.02/bin/R CMD INSTALL openCyto
###
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* installing to library ‘/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library’
* installing *source* package ‘openCyto’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
using C++17
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c Hungarian.cpp -o Hungarian.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c cpp11.cpp -o cpp11.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c misc.cpp -o misc.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c rlm.cpp -o rlm.o
In file included from /home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from /home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include/boost/mpl/arg.hpp:25,
                 from /home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include/boost/mpl/placeholders.hpp:24,
                 from /home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include/boost/accumulators/statistics/median.hpp:11,
                 from rlm.cpp:8:
/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^
/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^
rlm.cpp: In function ‘cpp11::list rlm_cpp(cpp11::doubles_matrix<>, cpp11::doubles, int)’:
rlm.cpp:55:10: warning: ‘scale’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   55 |   double scale;
      |          ^~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c solve_LSAP.cpp -o solve_LSAP.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c unlockNamespace.cpp -o unlockNamespace.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-devel/lib -L/usr/local/lib -o openCyto.so Hungarian.o cpp11.o misc.o rlm.o solve_LSAP.o unlockNamespace.o -L/home/biocbuild/R/R-devel/lib -lR
installing to /home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/00LOCK-openCyto/00new/openCyto/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (openCyto)