Back to Multiple platform build/check report for BioC 3.19:   simplified   long
ABCDEFGHIJKLM[N]OPQRSTUVWXYZ

This page was generated on 2023-11-28 11:39:28 -0500 (Tue, 28 Nov 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_64R Under development (unstable) (2023-11-11 r85510) -- "Unsuffered Consequences" 4601
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-11-14 r85524 ucrt) -- "Unsuffered Consequences" 4343
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2023-11-11 r85510) -- "Unsuffered Consequences" 4368
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2023-11-01 r85459) -- "Unsuffered Consequences" 4253
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1394/2225HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
normr 1.29.0  (landing page)
Johannes Helmuth
Snapshot Date: 2023-11-27 14:00:14 -0500 (Mon, 27 Nov 2023)
git_url: https://git.bioconductor.org/packages/normr
git_branch: devel
git_last_commit: db4896b
git_last_commit_date: 2023-10-24 10:51:02 -0500 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    ERROR  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    WARNINGS  

INSTALL results for normr on kunpeng2


To the developers/maintainers of the normr package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/normr.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: normr
Version: 1.29.0
Command: /home/biocbuild/R/R-4.4-devel-2023.11.02/bin/R CMD INSTALL normr
StartedAt: 2023-11-27 20:02:55 -0000 (Mon, 27 Nov 2023)
EndedAt: 2023-11-27 20:04:04 -0000 (Mon, 27 Nov 2023)
EllapsedTime: 69.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.4-devel-2023.11.02/bin/R CMD INSTALL normr
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library’
* installing *source* package ‘normr’ ...
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 10.3.1’
using C++ compiler: ‘g++ (GCC) 10.3.1’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c em.cpp -o em.o
gcc -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c normr_init.c -o normr_init.o
g++ -std=gnu++11 -shared -L/home/biocbuild/R/R-devel/lib -L/usr/local/lib -o normr.so RcppExports.o em.o normr_init.o -fopenmp -D_GLIBCXX_USE_C99 -L/home/biocbuild/R/R-devel/lib -lR
installing to /home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/00LOCK-normr/00new/normr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘getClasses’ in package ‘normr’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (normr)