Tim Daniel Rose
| Snapshot Date: 2024-04-28 14:00:16 -0400 (Sun, 28 Apr 2024) |
| git_url: https://git.bioconductor.org/packages/mosbi |
| git_branch: devel |
| git_last_commit: f7ace7e |
| git_last_commit_date: 2023-10-24 11:37:53 -0400 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-04-29 11:41:05 -0400 (Mon, 29 Apr 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4752 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 beta (2024-04-15 r86425 ucrt) -- "Puppy Cup" | 4486 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 beta (2024-04-14 r86421) -- "Puppy Cup" | 4518 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4475 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1323/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mosbi 1.9.0 (landing page) Tim Daniel Rose
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the mosbi package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mosbi.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: mosbi |
| Version: 1.9.0 |
| Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL mosbi |
| StartedAt: 2024-04-28 20:06:17 -0000 (Sun, 28 Apr 2024) |
| EndedAt: 2024-04-28 20:09:16 -0000 (Sun, 28 Apr 2024) |
| EllapsedTime: 178.6 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL mosbi
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’
* installing *source* package ‘mosbi’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
using C++17
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include' -I/usr/local/include -fPIC -g -O2 -Wall -c attr_graph.cpp -o attr_graph.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include' -I/usr/local/include -fPIC -g -O2 -Wall -c attributeConnector.cpp -o attributeConnector.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include' -I/usr/local/include -fPIC -g -O2 -Wall -c attribute_overlap.cpp -o attribute_overlap.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include' -I/usr/local/include -fPIC -g -O2 -Wall -c bicluster_methods.cpp -o bicluster_methods.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include' -I/usr/local/include -fPIC -g -O2 -Wall -c boost_graph.cpp -o boost_graph.o
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from boost_graph.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
75 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/opt_storage.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/archive_constructed.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_container.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:20,
from boost_graph.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/arg.hpp:25,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/graph_traits.hpp:25,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:24,
from boost_graph.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:18,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:27,
from boost_graph.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/opt_storage.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/archive_constructed.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_container.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:20,
from boost_graph.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:27,
from boost_graph.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/opt_storage.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/archive_constructed.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_container.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:20,
from boost_graph.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:27,
from boost_graph.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
508 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/opt_storage.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/archive_constructed.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_container.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:20,
from boost_graph.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:27,
from boost_graph.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
521 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/opt_storage.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/archive_constructed.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_container.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:20,
from boost_graph.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:27,
from boost_graph.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
604 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/opt_storage.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/archive_constructed.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_container.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:20,
from boost_graph.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:27,
from boost_graph.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
613 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/opt_storage.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/archive_constructed.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_container.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:20,
from boost_graph.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:27,
from boost_graph.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
615 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/opt_storage.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/archive_constructed.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_container.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:20,
from boost_graph.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/bind/mem_fn.hpp:25,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mem_fn.hpp:22,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/function/detail/prologue.hpp:19,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/function/function_template.hpp:13,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/function/detail/maybe_include.hpp:36,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/function/function3.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/dynamic_property_map.hpp:25,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/graphviz.hpp:25,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/graphml.hpp:20,
from boost_graph.cpp:3:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/get_pointer.hpp: At global scope:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/opt_storage.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/archive_constructed.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_container.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:20,
from boost_graph.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include' -I/usr/local/include -fPIC -g -O2 -Wall -c boost_write.cpp -o boost_write.o
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from boost_write.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
75 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/opt_storage.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/archive_constructed.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_container.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:20,
from boost_write.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/arg.hpp:25,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/graph_traits.hpp:25,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:24,
from boost_write.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:18,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:27,
from boost_write.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/opt_storage.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/archive_constructed.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_container.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:20,
from boost_write.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:27,
from boost_write.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/opt_storage.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/archive_constructed.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_container.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:20,
from boost_write.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:27,
from boost_write.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
508 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/opt_storage.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/archive_constructed.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_container.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:20,
from boost_write.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:27,
from boost_write.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
521 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/opt_storage.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/archive_constructed.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_container.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:20,
from boost_write.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:27,
from boost_write.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
604 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/opt_storage.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/archive_constructed.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_container.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:20,
from boost_write.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:27,
from boost_write.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
613 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/opt_storage.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/archive_constructed.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_container.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:20,
from boost_write.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:27,
from boost_write.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
615 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/opt_storage.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/archive_constructed.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_container.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:20,
from boost_write.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/bind/mem_fn.hpp:25,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mem_fn.hpp:22,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/function/detail/prologue.hpp:19,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/function/function_template.hpp:13,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/function/detail/maybe_include.hpp:36,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/function/function3.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/property_map/dynamic_property_map.hpp:25,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/graphviz.hpp:25,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/graphml.hpp:20,
from boost_write.cpp:3:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/get_pointer.hpp: At global scope:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/opt_storage.hpp:11,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/archive_constructed.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_container.hpp:14,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/detail/serialize_fca_container.hpp:12,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/unordered_set.hpp:17,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/graph/adjacency_list.hpp:20,
from boost_write.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include' -I/usr/local/include -fPIC -g -O2 -Wall -c distance_matrix.cpp -o distance_matrix.o
distance_matrix.cpp: In member function ‘virtual void SimWorker::operator()(std::size_t, std::size_t)’:
distance_matrix.cpp:244:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
244 | for(int i=begin;i<end;i++){
| ~^~~~
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include/RcppParallel/TinyThread.h:7,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include/RcppParallel.h:6,
from distance_matrix.cpp:2:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include/RcppParallel/Common.h: In instantiation of ‘int RcppParallel::resolveValue(const char*, T, U) [with T = long unsigned int; U = int]’:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include/RcppParallel.h:57:28: required from ‘void RcppParallel::parallelReduce(std::size_t, std::size_t, Reducer&, std::size_t, int) [with Reducer = SimWorker; std::size_t = long unsigned int]’
distance_matrix.cpp:278:43: required from here
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include/RcppParallel/Common.h:16:23: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
16 | if (requestedValue != defaultValue && requestedValue > 0)
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include' -I/usr/local/include -fPIC -g -O2 -Wall -c extractBF.cpp -o extractBF.o
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/arg.hpp:25,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/iterator/iterator_facade.hpp:13,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/range/iterator_range_core.hpp:27,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/range/iterator_range.hpp:13,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/range/as_literal.hpp:18,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/algorithm/string/trim.hpp:19,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/algorithm/string.hpp:19,
from extractBF.cpp:3:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/bind/mem_fn.hpp:25,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mem_fn.hpp:22,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/function/detail/prologue.hpp:19,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/function.hpp:30,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/algorithm/string/find_iterator.hpp:24,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/algorithm/string/iter_find.hpp:27,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/algorithm/string/split.hpp:16,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/algorithm/string.hpp:23,
from extractBF.cpp:3:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/bits/locale_conv.h:41,
from /usr/include/c++/10.3.1/locale:43,
from /usr/include/c++/10.3.1/iomanip:43,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include/RcppCommon.h:53,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include/Rcpp.h:27,
from extractBF.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
extractBF.cpp: In function ‘Rcpp::S4 getBFCluster(Rcpp::String, int)’:
extractBF.cpp:92:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
92 | for(int i=0; i<results.size();i++){
| ~^~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include' -I/usr/local/include -fPIC -g -O2 -Wall -c extractQUBIC2.cpp -o extractQUBIC2.o
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/arg.hpp:25,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/iterator/iterator_facade.hpp:13,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/range/iterator_range_core.hpp:27,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/range/iterator_range.hpp:13,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/range/as_literal.hpp:18,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/algorithm/string/trim.hpp:19,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/algorithm/string.hpp:19,
from extractQUBIC2.cpp:7:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/bind/mem_fn.hpp:25,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/mem_fn.hpp:22,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/function/detail/prologue.hpp:19,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/function.hpp:30,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/algorithm/string/find_iterator.hpp:24,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/algorithm/string/iter_find.hpp:27,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/algorithm/string/split.hpp:16,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/algorithm/string.hpp:23,
from extractQUBIC2.cpp:7:
/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/bits/locale_conv.h:41,
from /usr/include/c++/10.3.1/locale:43,
from /usr/include/c++/10.3.1/iomanip:43,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include/RcppCommon.h:53,
from /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include/Rcpp.h:27,
from extractQUBIC2.cpp:2:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include' -I/usr/local/include -fPIC -g -O2 -Wall -c full_graph.cpp -o full_graph.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include' -I/usr/local/include -fPIC -g -O2 -Wall -c misc.cpp -o misc.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include' -I/usr/local/include -fPIC -g -O2 -Wall -c network_edge_strength.cpp -o network_edge_strength.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include' -I/usr/local/include -fPIC -g -O2 -Wall -c sample_biclusters.cpp -o sample_biclusters.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/Rcpp/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/BH/include' -I'/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/RcppParallel/include' -I/usr/local/include -fPIC -g -O2 -Wall -c write_matrix.cpp -o write_matrix.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -L/usr/local/lib -o mosbi.so RcppExports.o attr_graph.o attributeConnector.o attribute_overlap.o bicluster_methods.o boost_graph.o boost_write.o distance_matrix.o extractBF.o extractQUBIC2.o full_graph.o misc.o network_edge_strength.o sample_biclusters.o write_matrix.o -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -lR
installing to /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/00LOCK-mosbi/00new/mosbi/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mosbi)