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This page was generated on 2024-05-03 11:38:34 -0400 (Fri, 03 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4660
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4391
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4422
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1253/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mirTarRnaSeq 1.13.0  (landing page)
Mercedeh Movassagh
Snapshot Date: 2024-05-01 14:05:06 -0400 (Wed, 01 May 2024)
git_url: https://git.bioconductor.org/packages/mirTarRnaSeq
git_branch: devel
git_last_commit: faa833a
git_last_commit_date: 2024-04-30 11:32:53 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    OK    OK  YES
kjohnson1macOS 13.6.6 Ventura / arm64see weekly results here

CHECK results for mirTarRnaSeq on merida1


To the developers/maintainers of the mirTarRnaSeq package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mirTarRnaSeq.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: mirTarRnaSeq
Version: 1.13.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mirTarRnaSeq_1.13.0.tar.gz
StartedAt: 2024-05-02 07:31:20 -0400 (Thu, 02 May 2024)
EndedAt: 2024-05-02 07:33:36 -0400 (Thu, 02 May 2024)
EllapsedTime: 136.1 seconds
RetCode: 0
Status:   OK  
CheckDir: mirTarRnaSeq.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mirTarRnaSeq_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/mirTarRnaSeq.Rcheck’
* using R version 4.4.0 Patched (2024-04-24 r86482)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.4
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mirTarRnaSeq/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mirTarRnaSeq’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mirTarRnaSeq’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘ggplot2’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.20-bioc/meat/mirTarRnaSeq.Rcheck/00check.log’
for details.


Installation output

mirTarRnaSeq.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL mirTarRnaSeq
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘mirTarRnaSeq’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mirTarRnaSeq)

Tests output


Example timings

mirTarRnaSeq.Rcheck/mirTarRnaSeq-Ex.timings

nameusersystemelapsed
combiner0.0100.0050.017
corMirnaRna0.1180.0150.160
corMirnaRnaMiranda0.2180.0410.318
downloadMirandaFile0.0000.0010.001
drawCorPlot0.0000.0010.001
drawInterPlots0.0480.0030.061
fdrSig1.3730.0241.685
finInterResult0.0020.0010.002
geneVari0.0000.0010.002
getInputSpecies0.5260.0700.725
glm_gaussian0.0010.0000.001
glm_multi0.0000.0000.001
glm_nb0.0010.0000.001
glm_poisson0.0000.0000.001
glm_zeroinfl0.0010.0000.002
glm_zeroinfl_negbin0.0010.0000.001
glm_zeroinfl_poisson000
importMirandaFile0.0000.0000.001
makeFormulaRightSide0.0010.0010.001
miRanComp0.0600.0090.078
miRandaIntersect0.0250.0020.034
mirRnaDensityCor0.1020.0120.141
mirRnaDensityInter000
mirRnaHeatmap1.6740.0572.118
mirRnaHeatmapDiff0.1810.0080.231
mirandaIntersectInter0.0230.0010.033
modelAIC0.1180.0100.160
modelCoefficients0.0020.0010.002
modelData0.0010.0010.001
modelModelName0.0010.0010.002
modelModelPvalue0.0010.0000.001
modelTermPvalues0.0020.0000.003
modelsFilter000
one2OneRnaMiRNA0.0010.0010.001
plotFit0.0120.0010.018
plotResiduals0.0140.0010.019
plotTerms0.0060.0010.008
runAllMirnaModels1.1720.0521.443
runModels1.3230.0231.585
sampCorRnaMirna0.7170.0690.943
threshSig000
threshSigInter0.0020.0000.002
twoTimePoint000
twoTimePointSamp000
tzTrans0.0160.0000.021