Multiple platform build/check report for BioC 3.19 - BUILD results for miloR on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.2 LTS)	x86_64	R Under development (unstable) (2023-11-11 r85510) -- "Unsuffered Consequences"	4601
palomino3	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2023-11-14 r85524 ucrt) -- "Unsuffered Consequences"	4343
merida1	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2023-11-11 r85510) -- "Unsuffered Consequences"	4368
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	R Under development (unstable) (2023-11-01 r85459) -- "Unsuffered Consequences"	4253
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the miloR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/miloR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

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### Running command:
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###   /home/biocbuild/R/R-4.4-devel-2023.11.02/bin/R CMD build --keep-empty-dirs --no-resave-data miloR
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* checking for file ‘miloR/DESCRIPTION’ ... OK
* preparing ‘miloR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘milo_contrasts.Rmd’ using rmarkdown

Quitting from lines 55-61 [unnamed-chunk-3] (milo_contrasts.Rmd)
Error: processing vignette 'milo_contrasts.Rmd' failed with diagnostics:
function 'as_cholmod_sparse' not provided by package 'Matrix'
--- failed re-building ‘milo_contrasts.Rmd’

--- re-building ‘milo_demo.Rmd’ using rmarkdown

Quitting from lines 66-71 [unnamed-chunk-3] (milo_demo.Rmd)
Error: processing vignette 'milo_demo.Rmd' failed with diagnostics:
function 'as_cholmod_sparse' not provided by package 'Matrix'
--- failed re-building ‘milo_demo.Rmd’

--- re-building ‘milo_gastrulation.Rmd’ using rmarkdown
Warning: ggrepel: 6 unlabeled data points (too many overlaps). Consider increasing max.overlaps
--- finished re-building ‘milo_gastrulation.Rmd’

--- re-building ‘milo_glmm.Rmd’ using rmarkdown

Quitting from lines 61-63 [unnamed-chunk-2] (milo_glmm.Rmd)
Error: processing vignette 'milo_glmm.Rmd' failed with diagnostics:
Corrupt Cache: index file
  See AnnotationHub's TroubleshootingTheCache vignette section on corrupt cache
  cache: /home/biocbuild/.cache/R/AnnotationHub
  filename: annotationhub.index.rds
--- failed re-building ‘milo_glmm.Rmd’

SUMMARY: processing the following files failed:
  ‘milo_contrasts.Rmd’ ‘milo_demo.Rmd’ ‘milo_glmm.Rmd’

Error: Vignette re-building failed.
Execution halted

BUILD results for miloR on kunpeng2

Summary

Command output