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This page was generated on 2023-09-30 11:37:41 -0400 (Sat, 30 Sep 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4660
palomino4Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4396
lconwaymacOS 12.6.5 Montereyx86_644.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" 4416
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.3.1 (2023-06-16) -- "Beagle Scouts" 4401
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1260/2233HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miRSM 1.19.0  (landing page)
Junpeng Zhang
Snapshot Date: 2023-09-29 14:05:07 -0400 (Fri, 29 Sep 2023)
git_url: https://git.bioconductor.org/packages/miRSM
git_branch: devel
git_last_commit: d8e20ed
git_last_commit_date: 2023-04-25 11:04:00 -0400 (Tue, 25 Apr 2023)
nebbiolo2Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  NO, package depends on 'miRspongeR' which is not available
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.6.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

BUILD BIN results for miRSM on palomino4


To the developers/maintainers of the miRSM package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/miRSM.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: miRSM
Version: 1.19.0
Command: rm -rf miRSM.buildbin-libdir && mkdir miRSM.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=miRSM.buildbin-libdir miRSM_1.19.0.tar.gz
StartedAt: 2023-09-30 08:29:56 -0400 (Sat, 30 Sep 2023)
EndedAt: 2023-09-30 08:31:36 -0400 (Sat, 30 Sep 2023)
EllapsedTime: 99.7 seconds
RetCode: 0
Status:   OK  
PackageFile: miRSM_1.19.0.zip
PackageFileSize: 976.4 KiB

Command output

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### Running command:
###
###   rm -rf miRSM.buildbin-libdir && mkdir miRSM.buildbin-libdir && F:\biocbuild\bbs-3.18-bioc\R\bin\R.exe CMD INSTALL --build --library=miRSM.buildbin-libdir miRSM_1.19.0.tar.gz
###
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* installing *source* package 'miRSM' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 12.2.0'
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c complex.c -o complex.o
gcc  -I"F:/biocbuild/bbs-3.18-bioc/R/include" -DNDEBUG     -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
gcc -shared -s -static-libgcc -o miRSM.dll tmp.def complex.o registerDynamicSymbol.o -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.18-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.18-bioc/meat/miRSM.buildbin-libdir/00LOCK-miRSM/00new/miRSM/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::combine' by 'dplyr::combine' when loading 'SPONGE'
Warning: replacing previous import 'cvms::font' by 'ggpubr::font' when loading 'SPONGE'
Warning: replacing previous import 'ggplot2::margin' by 'randomForest::margin' when loading 'SPONGE'
Warning: replacing previous import 'dplyr::combine' by 'randomForest::combine' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::exprs' by 'rlang::exprs' when loading 'SPONGE'
Warning: replacing previous import 'rlang::exprs' by 'Biobase::exprs' when loading 'SPONGE'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::combine' by 'dplyr::combine' when loading 'SPONGE'
Warning: replacing previous import 'cvms::font' by 'ggpubr::font' when loading 'SPONGE'
Warning: replacing previous import 'ggplot2::margin' by 'randomForest::margin' when loading 'SPONGE'
Warning: replacing previous import 'dplyr::combine' by 'randomForest::combine' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::exprs' by 'rlang::exprs' when loading 'SPONGE'
Warning: replacing previous import 'rlang::exprs' by 'Biobase::exprs' when loading 'SPONGE'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::combine' by 'dplyr::combine' when loading 'SPONGE'
Warning: replacing previous import 'cvms::font' by 'ggpubr::font' when loading 'SPONGE'
Warning: replacing previous import 'ggplot2::margin' by 'randomForest::margin' when loading 'SPONGE'
Warning: replacing previous import 'dplyr::combine' by 'randomForest::combine' when loading 'SPONGE'
Warning: replacing previous import 'Biobase::exprs' by 'rlang::exprs' when loading 'SPONGE'
Warning: replacing previous import 'rlang::exprs' by 'Biobase::exprs' when loading 'SPONGE'
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'miRSM' as miRSM_1.19.0.zip
* DONE (miRSM)