Multiple platform build/check report for BioC 3.20 - BUILD results for genomeIntervals on palomino4

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup"	4662
palomino4	Windows Server 2022 Datacenter	x64	4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup"	4393
merida1	macOS 12.7.4 Monterey	x86_64	4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup"	4424
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the genomeIntervals package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/genomeIntervals.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

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### Running command:
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###   chmod a+r genomeIntervals -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data genomeIntervals
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* checking for file 'genomeIntervals/DESCRIPTION' ... OK
* preparing 'genomeIntervals':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'genomeIntervals.Rnw' using Sweave
Loading required package: intervals
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:intervals':

    type, type<-

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
    union, unique, unsplit, which.max, which.min

Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 1033
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "genomeIntervals.tex" ' had status 1033
Error: processing vignette 'genomeIntervals.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'genomeIntervals.pdf' for vignette with name 'genomeIntervals' and engine 'utils::Sweave'. The following files exist in working directory 'F:\biocbuild\bbs-3.20-bioc\tmpdir\RtmpABqhvf\Rbuild241c67d46459\genomeIntervals\vignettes': 'genomeIntervals.Rnw' (10440 bytes), 'genomeIntervals.tex' (20787 bytes)
--- failed re-building 'genomeIntervals.Rnw'

SUMMARY: processing the following file failed:
  'genomeIntervals.Rnw'

Error: Vignette re-building failed.
Execution halted

BUILD results for genomeIntervals on palomino4

Summary

Command output