Back to Multiple platform build/check report for BioC 3.17:   simplified   long
ABCDE[F]GHIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-02-06 11:06:36 -0500 (Mon, 06 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" 4483
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-01-10 r83596 ucrt) -- "Unsuffered Consequences" 4249
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" 4272
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for fcScan on merida1


To the developers/maintainers of the fcScan package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fcScan.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 659/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fcScan 1.13.0  (landing page)
Pierre Khoueiry Abdullah El-Kurdi
Snapshot Date: 2023-02-05 14:00:11 -0500 (Sun, 05 Feb 2023)
git_url: https://git.bioconductor.org/packages/fcScan
git_branch: master
git_last_commit: 4f8702f
git_last_commit_date: 2022-11-01 11:20:20 -0500 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: fcScan
Version: 1.13.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:fcScan.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings fcScan_1.13.0.tar.gz
StartedAt: 2023-02-06 01:17:59 -0500 (Mon, 06 Feb 2023)
EndedAt: 2023-02-06 01:28:57 -0500 (Mon, 06 Feb 2023)
EllapsedTime: 657.8 seconds
RetCode: 0
Status:   OK  
CheckDir: fcScan.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:fcScan.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings fcScan_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.17-bioc/meat/fcScan.Rcheck’
* using R Under development (unstable) (2023-01-10 r83596)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* R was compiled by
    Apple clang version 12.0.0 (clang-1200.0.32.29)
    GNU Fortran (GCC) 8.2.0
* running under: macOS Mojave 10.14.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘fcScan/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘fcScan’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fcScan’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

fcScan.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL fcScan
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.3/Resources/library’
* installing *source* package ‘fcScan’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fcScan)

Tests output

fcScan.Rcheck/tests/runTests.Rout


R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: GenomeInfoDb
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.650986 secs
Sites in condition do not match sites in data
3  entries loaded 
Running getCluster using 1 threads
Time difference of 0.230803 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2394059 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2254782 secs
17  entries loaded 
Running getCluster using 1 threads
No cluster found
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2792969 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.189018 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2102389 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1804972 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.188132 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1724541 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.196949 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.188484 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1659129 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.169173 secs
10  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1951809 secs
10  entries loaded 
Running getCluster using 1 threads
No cluster found
10  entries loaded 
Running getCluster using 1 threads
Time difference of 0.206872 secs
16  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1856701 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1977639 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.183928 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2008469 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.184767 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2028341 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1945698 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2240651 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2534521 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.18784 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1852531 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.166491 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.172061 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2544529 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2243042 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2498128 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.280225 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.210161 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2577519 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.250457 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.198189 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1996 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1835508 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2361879 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1837978 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.266125 secs


RUNIT TEST PROTOCOL -- Mon Feb  6 01:28:45 2023 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
 32.512   1.468  47.016 

Example timings

fcScan.Rcheck/fcScan-Ex.timings

nameusersystemelapsed
getCluster0.5490.0210.759