Alexander Blume
| Snapshot Date: 2023-02-03 14:00:22 -0500 (Fri, 03 Feb 2023) |
| git_url: https://git.bioconductor.org/packages/fastseg |
| git_branch: master |
| git_last_commit: 1d51d68 |
| git_last_commit_date: 2022-11-01 11:06:32 -0500 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-02-04 11:06:06 -0500 (Sat, 04 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" | 4483 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2023-01-10 r83596 ucrt) -- "Unsuffered Consequences" | 4249 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" | 4272 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the fastseg package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fastseg.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 654/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| fastseg 1.45.0 (landing page) Alexander Blume
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | NA | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: fastseg |
| Version: 1.45.0 |
| Command: rm -rf fastseg.buildbin-libdir && mkdir fastseg.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh fastseg_1.45.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R fastseg.buildbin-libdir |
| StartedAt: 2023-02-04 09:01:58 -0500 (Sat, 04 Feb 2023) |
| EndedAt: 2023-02-04 09:02:47 -0500 (Sat, 04 Feb 2023) |
| EllapsedTime: 48.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: fastseg_1.45.0.tgz |
| PackageFileSize: 552.6 KiB |
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### Running command:
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### rm -rf fastseg.buildbin-libdir && mkdir fastseg.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh fastseg_1.45.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R fastseg.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=fastseg.buildbin-libdir fastseg_1.45.0.tar.gz'
>>>>>>>
* installing *source* package ‘fastseg’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 11.0.0 (clang-1100.0.33.17)’
using C++ compiler: ‘Apple clang version 11.0.0 (clang-1100.0.33.17)’
using SDK: ‘’
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c R_init_fastseg.c -o R_init_fastseg.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c segment.cpp -o segment.o
segment.cpp:65:9: warning: unused variable 'Rf_beta' [-Wunused-variable]
double beta,nn;
^
/Library/Frameworks/R.framework/Resources/include/Rmath.h:210:15: note: expanded from macro 'beta'
#define beta Rf_beta
^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c segmentCyberT.cpp -o segmentCyberT.o
segmentCyberT.cpp:63:50: warning: unused variable 'Rf_beta' [-Wunused-variable]
double newStatisticBptLeft,newStatisticBptRight,beta,nn;
^
/Library/Frameworks/R.framework/Resources/include/Rmath.h:210:15: note: expanded from macro 'beta'
#define beta Rf_beta
^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fastseg.so R_init_fastseg.o segment.o segmentCyberT.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.17-bioc/meat/fastseg.buildbin-libdir/00LOCK-fastseg/00new/fastseg/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fastseg)
>>>>>>>
>>>>>>> FIXING LINKS FOR fastseg.buildbin-libdir/fastseg/libs/fastseg.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libgcc_s.1.dylib" "fastseg.buildbin-libdir/fastseg/libs/fastseg.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libgfortran.5.dylib" "fastseg.buildbin-libdir/fastseg/libs/fastseg.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libquadmath.0.dylib" "fastseg.buildbin-libdir/fastseg/libs/fastseg.so"