Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-05-03 11:38:20 -0400 (Fri, 03 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4660 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4391 |
merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4422 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 659/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
escheR 1.5.0 (landing page) Boyi Guo
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
merida1 | macOS 12.7.4 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the escheR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/escheR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: escheR |
Version: 1.5.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data escheR |
StartedAt: 2024-05-01 18:56:34 -0400 (Wed, 01 May 2024) |
EndedAt: 2024-05-01 18:58:07 -0400 (Wed, 01 May 2024) |
EllapsedTime: 92.9 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data escheR ### ############################################################################## ############################################################################## * checking for file ‘escheR/DESCRIPTION’ ... OK * preparing ‘escheR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘SRT_eg.Rmd’ using rmarkdown Quitting from lines at lines 79-84 [data.import] (SRT_eg.Rmd) Error: processing vignette 'SRT_eg.Rmd' failed with diagnostics: "Visium_humanDLPFC" matches more than 1 ExperimentHub resource --- failed re-building ‘SRT_eg.Rmd’ --- re-building ‘more_than_visium.Rmd’ using rmarkdown Quitting from lines at lines 29-49 [redDim_spe] (more_than_visium.Rmd) Error: processing vignette 'more_than_visium.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'logNormCounts': "Visium_humanDLPFC" matches more than 1 ExperimentHub resource --- failed re-building ‘more_than_visium.Rmd’ SUMMARY: processing the following files failed: ‘SRT_eg.Rmd’ ‘more_than_visium.Rmd’ Error: Vignette re-building failed. Execution halted