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This page was generated on 2024-03-28 11:39:14 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4708
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" 4446
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4471
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" 4426
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 675/2270HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
escheR 1.3.2  (landing page)
Boyi Guo
Snapshot Date: 2024-03-27 14:00:18 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/escheR
git_branch: devel
git_last_commit: cba06f7
git_last_commit_date: 2024-01-12 16:28:33 -0400 (Fri, 12 Jan 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

BUILD results for escheR on lconway


To the developers/maintainers of the escheR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/escheR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: escheR
Version: 1.3.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data escheR
StartedAt: 2024-03-27 16:42:02 -0400 (Wed, 27 Mar 2024)
EndedAt: 2024-03-27 16:42:44 -0400 (Wed, 27 Mar 2024)
EllapsedTime: 42.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data escheR
###
##############################################################################
##############################################################################


* checking for file ‘escheR/DESCRIPTION’ ... OK
* preparing ‘escheR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SRT_eg.Rmd’ using rmarkdown

Quitting from lines 69-71 [setup] (SRT_eg.Rmd)
Error: processing vignette 'SRT_eg.Rmd' failed with diagnostics:
package or namespace load failed for 'STexampleData':
 .onLoad failed in loadNamespace() for 'STexampleData', details:
  call: h(simpleError(msg, call))
  error: error in evaluating the argument 'x' in selecting a method for function 'query': failed to connect
  reason: Scanner error: mapping values are not allowed in this context at line 3, column 13
  Consider rerunning with 'localHub=TRUE'
--- failed re-building ‘SRT_eg.Rmd’

--- re-building ‘more_than_visium.Rmd’ using rmarkdown

Quitting from lines 29-49 [redDim_spe] (more_than_visium.Rmd)
Error: processing vignette 'more_than_visium.Rmd' failed with diagnostics:
package or namespace load failed for 'STexampleData':
 .onLoad failed in loadNamespace() for 'STexampleData', details:
  call: h(simpleError(msg, call))
  error: error in evaluating the argument 'x' in selecting a method for function 'query': failed to connect
  reason: Scanner error: mapping values are not allowed in this context at line 3, column 13
  Consider rerunning with 'localHub=TRUE'
--- failed re-building ‘more_than_visium.Rmd’

SUMMARY: processing the following files failed:
  ‘SRT_eg.Rmd’ ‘more_than_visium.Rmd’

Error: Vignette re-building failed.
Execution halted