| Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2023-12-01 11:38:53 -0500 (Fri, 01 Dec 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | R Under development (unstable) (2023-11-11 r85510) -- "Unsuffered Consequences" | 4601 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2023-11-14 r85524 ucrt) -- "Unsuffered Consequences" | 4343 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2023-11-11 r85510) -- "Unsuffered Consequences" | 4368 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2023-11-01 r85459) -- "Unsuffered Consequences" | 4253 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 652/2225 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| epivizrChart 1.25.0 (landing page) Hector Corrada Bravo
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
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To the developers/maintainers of the epivizrChart package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epivizrChart.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: epivizrChart |
| Version: 1.25.0 |
| Command: /home/biocbuild/R/R-4.4-devel-2023.11.02/bin/R CMD build --keep-empty-dirs --no-resave-data epivizrChart |
| StartedAt: 2023-11-30 23:25:38 -0000 (Thu, 30 Nov 2023) |
| EndedAt: 2023-11-30 23:27:47 -0000 (Thu, 30 Nov 2023) |
| EllapsedTime: 129.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.4-devel-2023.11.02/bin/R CMD build --keep-empty-dirs --no-resave-data epivizrChart ### ############################################################################## ############################################################################## * checking for file ‘epivizrChart/DESCRIPTION’ ... OK * preparing ‘epivizrChart’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘IntegrationWithIGVjs.Rmd’ using rmarkdown --- finished re-building ‘IntegrationWithIGVjs.Rmd’ --- re-building ‘IntegrationWithShiny.Rmd’ using rmarkdown --- finished re-building ‘IntegrationWithShiny.Rmd’ --- re-building ‘IntroToEpivizrChart.Rmd’ using rmarkdown Quitting from lines 351-354 [unnamed-chunk-25] (IntroToEpivizrChart.Rmd) Error: processing vignette 'IntroToEpivizrChart.Rmd' failed with diagnostics: Corrupt Cache: index file See AnnotationHub's TroubleshootingTheCache vignette section on corrupt cache cache: /home/biocbuild/.cache/R/AnnotationHub filename: annotationhub.index.rds --- failed re-building ‘IntroToEpivizrChart.Rmd’ --- re-building ‘VisualizeSumExp.Rmd’ using rmarkdown --- finished re-building ‘VisualizeSumExp.Rmd’ SUMMARY: processing the following file failed: ‘IntroToEpivizrChart.Rmd’ Error: Vignette re-building failed. Execution halted