Oleksii Nikolaienko
| Snapshot Date: 2023-12-03 14:00:14 -0500 (Sun, 03 Dec 2023) |
| git_url: https://git.bioconductor.org/packages/epialleleR |
| git_branch: devel |
| git_last_commit: 077e142 |
| git_last_commit_date: 2023-11-01 15:32:57 -0500 (Wed, 01 Nov 2023) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2023-12-04 11:39:02 -0500 (Mon, 04 Dec 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | R Under development (unstable) (2023-11-11 r85510) -- "Unsuffered Consequences" | 4602 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2023-11-14 r85524 ucrt) -- "Unsuffered Consequences" | 4345 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2023-11-11 r85510) -- "Unsuffered Consequences" | 4370 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2023-11-01 r85459) -- "Unsuffered Consequences" | 4255 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 639/2225 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| epialleleR 1.11.2 (landing page) Oleksii Nikolaienko
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the epialleleR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epialleleR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: epialleleR |
| Version: 1.11.2 |
| Command: /home/biocbuild/R/R-4.4-devel-2023.11.02/bin/R CMD INSTALL epialleleR |
| StartedAt: 2023-12-03 20:55:50 -0000 (Sun, 03 Dec 2023) |
| EndedAt: 2023-12-03 20:59:00 -0000 (Sun, 03 Dec 2023) |
| EllapsedTime: 189.8 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.4-devel-2023.11.02/bin/R CMD INSTALL epialleleR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library’ * installing *source* package ‘epialleleR’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 10.3.1’ using C++17 g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -Wall -c rcpp_call_methylation.cpp -o rcpp_call_methylation.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -Wall -c rcpp_check_bam.cpp -o rcpp_check_bam.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -Wall -c rcpp_cx_report.cpp -o rcpp_cx_report.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -Wall -c rcpp_extract_patterns.cpp -o rcpp_extract_patterns.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -Wall -c rcpp_fep.cpp -o rcpp_fep.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -Wall -c rcpp_get_base_freqs.cpp -o rcpp_get_base_freqs.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -Wall -c rcpp_get_xm_beta.cpp -o rcpp_get_xm_beta.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -Wall -c rcpp_match_target.cpp -o rcpp_match_target.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -Wall -c rcpp_mhl_report.cpp -o rcpp_mhl_report.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -Wall -c rcpp_read_bam.cpp -o rcpp_read_bam.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -Wall -c rcpp_read_genome.cpp -o rcpp_read_genome.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -Wall -c rcpp_simulate_bam.cpp -o rcpp_simulate_bam.o g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/BH/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -Wall -c rcpp_threshold_reads.cpp -o rcpp_threshold_reads.o g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-devel/lib -L/usr/local/lib -o epialleleR.so RcppExports.o rcpp_call_methylation.o rcpp_check_bam.o rcpp_cx_report.o rcpp_extract_patterns.o rcpp_fep.o rcpp_get_base_freqs.o rcpp_get_xm_beta.o rcpp_match_target.o rcpp_mhl_report.o rcpp_read_bam.o rcpp_read_genome.o rcpp_simulate_bam.o rcpp_threshold_reads.o /home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/usrlib/libhts.a -lcurl -L/home/biocbuild/R/R-devel/lib -lR installing to /home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/00LOCK-epialleleR/00new/epialleleR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (epialleleR)