Back to Multiple platform build/check report for BioC 3.20:   simplified   long
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2024-05-17 11:37:14 -0400 (Fri, 17 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4663
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4398
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4425
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 301/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cellxgenedp 1.9.0  (landing page)
Martin Morgan
Snapshot Date: 2024-05-15 14:05:05 -0400 (Wed, 15 May 2024)
git_url: https://git.bioconductor.org/packages/cellxgenedp
git_branch: devel
git_last_commit: 525c4aa
git_last_commit_date: 2024-04-30 11:40:40 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64see weekly results here

BUILD results for cellxgenedp on palomino4


To the developers/maintainers of the cellxgenedp package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cellxgenedp.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: cellxgenedp
Version: 1.9.0
Command: chmod a+r cellxgenedp -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data cellxgenedp
StartedAt: 2024-05-15 17:35:29 -0400 (Wed, 15 May 2024)
EndedAt: 2024-05-15 17:36:58 -0400 (Wed, 15 May 2024)
EllapsedTime: 88.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r cellxgenedp -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data cellxgenedp
###
##############################################################################
##############################################################################


* checking for file 'cellxgenedp/DESCRIPTION' ... OK
* preparing 'cellxgenedp':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'a_using_cellxgenedp.Rmd' using rmarkdown

Quitting from lines 331-333 [readH5AD] (a_using_cellxgenedp.Rmd)
Error: processing vignette 'a_using_cellxgenedp.Rmd' failed with diagnostics:
HDF5. File accessibility. Unable to open file.
--- failed re-building 'a_using_cellxgenedp.Rmd'

--- re-building 'b_case_studies.Rmd' using rmarkdown
[WARNING] Duplicate link reference '[OLSr]' at line 580 column 1
--- finished re-building 'b_case_studies.Rmd'

SUMMARY: processing the following file failed:
  'a_using_cellxgenedp.Rmd'

Error: Vignette re-building failed.
Execution halted