Pierrick Roger
| Snapshot Date: 2024-03-01 14:00:22 -0500 (Fri, 01 Mar 2024) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: devel |
| git_last_commit: 8651955 |
| git_last_commit_date: 2023-10-24 11:38:18 -0500 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-03-04 11:38:55 -0500 (Mon, 04 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" | 4676 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" | 4414 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" | 4441 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" | 4417 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 200/2251 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.9.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbHmdb |
| Version: 1.9.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.9.0.tar.gz |
| StartedAt: 2024-03-02 00:47:22 -0500 (Sat, 02 Mar 2024) |
| EndedAt: 2024-03-02 00:49:10 -0500 (Sat, 02 Mar 2024) |
| EllapsedTime: 107.5 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 1 |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.9.0.tar.gz
###
##############################################################################
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* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck’
* using R Under development (unstable) (2024-01-16 r85808)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.9.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
‘/Users/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.
biodbHmdb.Rcheck/00install.out
##############################################################################
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################
* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
accession_tag("<accession>", "</accession>"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
closed(true)
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c TagDetector.cpp -o TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-runner.cpp -o test-runner.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package ‘biodbHmdb’
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-03-02 00:48:33.065][biodb::testContext]
biodb.INFO [2024-03-02 00:48:33.072][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 00:48:33.077][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-03-02 00:48:33.080][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 00:48:33.082][biodb::testContext]
biodb.INFO [2024-03-02 00:48:33.085][biodb::testThat]
biodb.INFO [2024-03-02 00:48:33.091][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2024-03-02 00:48:33.094][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 00:48:33.096][biodb::testThat]
biodb.INFO [2024-03-02 00:48:33.383][biodb::testContext]
biodb.INFO [2024-03-02 00:48:33.385][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 00:48:33.387][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-03-02 00:48:33.390][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 00:48:33.394][biodb::testContext]
biodb.INFO [2024-03-02 00:48:33.418][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.11.0.
biodb.DEBUG[2024-03-02 00:48:33.423][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-02 00:48:33.439][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 00:48:33.442][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-02 00:48:33.445][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-02 00:48:33.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:33.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:33.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:33.457][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-02 00:48:33.522][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-02 00:48:33.527][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:33.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:33.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:33.536][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-02 00:48:33.539][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-02 00:48:33.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:33.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:33.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:33.549][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-02 00:48:33.552][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-02 00:48:33.555][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-02 00:48:33.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:33.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:33.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:33.565][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-02 00:48:33.568][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-02 00:48:33.571][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-02 00:48:33.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:33.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:33.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:33.580][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-02 00:48:33.583][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-02 00:48:33.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:33.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:33.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:33.592][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-02 00:48:33.595][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-02 00:48:33.597][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-02 00:48:33.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:33.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:33.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:33.606][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-02 00:48:33.608][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-02 00:48:33.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:33.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:33.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:33.619][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-02 00:48:33.621][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-02 00:48:33.625][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-02 00:48:33.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:33.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:33.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:33.634][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-02 00:48:33.638][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-02 00:48:33.640][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-02 00:48:33.642][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-02 00:48:33.645][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-02 00:48:33.648][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-02 00:48:33.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:33.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:33.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:33.656][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-02 00:48:33.659][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-02 00:48:33.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:33.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:33.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:33.670][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-02 00:48:33.673][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-02 00:48:33.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:33.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:33.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:33.684][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-02 00:48:33.687][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-02 00:48:33.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:33.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:33.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:33.696][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-02 00:48:33.699][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-02 00:48:33.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:33.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:33.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:33.710][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-02 00:48:33.712][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-02 00:48:33.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:33.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:33.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:33.722][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-02 00:48:33.724][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-02 00:48:33.745][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-02 00:48:33.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:33.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:33.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:33.753][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-02 00:48:33.756][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-02 00:48:33.758][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-02 00:48:33.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:33.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:33.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:33.772][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-02 00:48:33.853][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:33.891][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-02 00:48:33.894][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:33.896][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 00:48:33.898][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:33.900][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 00:48:33.902][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:33.904][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 00:48:33.907][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 00:48:33.909][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 00:48:33.911][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:33.914][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-02 00:48:33.916][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 00:48:33.919][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:33.921][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:33.923][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 00:48:33.923][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 00:48:33.923][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 00:48:33.923][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-02 00:48:33.923][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-02 00:48:33.925][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 00:48:33.927][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:33.929][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:33.931][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 00:48:33.934][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:33.936][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:33.945][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 00:48:33.948][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:33.950][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 00:48:33.952][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 00:48:33.954][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:33.955][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:33.957][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-02 00:48:33.959][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:33.961][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-02 00:48:33.962][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:33.963][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 00:48:33.965][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:33.967][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 00:48:33.969][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:33.971][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 00:48:33.973][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-02 00:48:33.975][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 00:48:33.978][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:33.980][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-02 00:48:33.982][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 00:48:33.984][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:33.986][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:33.988][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 00:48:33.988][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 00:48:33.988][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 00:48:33.988][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-02 00:48:33.988][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-02 00:48:33.990][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 00:48:33.992][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:33.994][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:33.995][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 00:48:33.997][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:33.998][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:33.999][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 00:48:34.001][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:34.003][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 00:48:34.004][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 00:48:34.006][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:34.007][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:34.010][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-02 00:48:34.014][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:34.016][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-02 00:48:34.018][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:34.021][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 00:48:34.022][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:34.023][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 00:48:34.025][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:34.027][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 00:48:34.029][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 00:48:34.031][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 00:48:34.033][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:34.035][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-02 00:48:34.037][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 00:48:34.039][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:34.041][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:34.043][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:34.044][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 00:48:34.046][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:34.048][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:34.050][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 00:48:34.052][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:34.054][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:34.056][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 00:48:34.058][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:34.060][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 00:48:34.062][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 00:48:34.064][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:34.066][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:34.069][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-02 00:48:34.073][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:34.075][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-02 00:48:34.078][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:34.080][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 00:48:34.082][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:34.084][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 00:48:34.086][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:34.089][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 00:48:34.091][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-02 00:48:34.093][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 00:48:34.095][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:34.098][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-02 00:48:34.100][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 00:48:34.102][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:34.104][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:34.106][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:34.108][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 00:48:34.110][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:34.112][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:34.114][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 00:48:34.116][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:34.118][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:34.119][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 00:48:34.121][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:34.123][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 00:48:34.125][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 00:48:34.127][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:34.129][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:34.137][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 00:48:34.139][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.198][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.295][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-02 00:48:34.311][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-02 00:48:34.315][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-02 00:48:34.318][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-02 00:48:34.321][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-02 00:48:34.324][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-02 00:48:34.326][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-02 00:48:34.327][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-02 00:48:34.329][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-02 00:48:34.331][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-02 00:48:34.334][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-02 00:48:34.337][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-02 00:48:34.340][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-02 00:48:34.342][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-02 00:48:34.345][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-02 00:48:34.348][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-02 00:48:34.351][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-02 00:48:34.353][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-02 00:48:34.357][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-02 00:48:34.360][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-02 00:48:34.363][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-02 00:48:34.366][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-02 00:48:34.369][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-02 00:48:34.373][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-02 00:48:34.376][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-02 00:48:34.379][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-02 00:48:34.383][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-02 00:48:34.386][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-02 00:48:34.389][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-02 00:48:34.392][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-02 00:48:34.396][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-02 00:48:34.399][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-02 00:48:34.402][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-02 00:48:34.406][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-02 00:48:34.409][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-02 00:48:34.412][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-02 00:48:34.416][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-02 00:48:34.419][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-02 00:48:34.423][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-02 00:48:34.427][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-02 00:48:34.430][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-02 00:48:34.434][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-02 00:48:34.438][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-02 00:48:34.441][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-02 00:48:34.445][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-02 00:48:34.448][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-02 00:48:34.451][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-02 00:48:34.454][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-02 00:48:34.458][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-02 00:48:34.460][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-02 00:48:34.463][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-02 00:48:34.466][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-02 00:48:34.469][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-02 00:48:34.472][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-02 00:48:34.475][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-02 00:48:34.478][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-02 00:48:34.482][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-02 00:48:34.485][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-02 00:48:34.489][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-02 00:48:34.492][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-02 00:48:34.495][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-02 00:48:34.498][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-02 00:48:34.501][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-02 00:48:34.505][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-02 00:48:34.507][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-02 00:48:34.510][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-02 00:48:34.513][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-02 00:48:34.516][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-02 00:48:34.519][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-02 00:48:34.522][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-02 00:48:34.525][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-02 00:48:34.529][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-02 00:48:34.531][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-02 00:48:34.534][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-02 00:48:34.537][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-02 00:48:34.540][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-02 00:48:34.544][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-02 00:48:34.547][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-02 00:48:34.550][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-02 00:48:34.558][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-02 00:48:34.561][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-02 00:48:34.564][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-02 00:48:34.568][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-02 00:48:34.581][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-02 00:48:34.584][initialize] This is biodb version 1.11.0.
biodb.DEBUG[2024-03-02 00:48:34.591][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 00:48:34.593][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.598][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:34.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:34.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:34.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:34.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:34.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:34.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:34.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:34.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:34.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:34.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:34.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:34.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:34.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:34.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:34.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:34.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.762][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:34.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:34.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:34.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:34.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.787][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:34.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:34.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:34.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:34.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.814][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:34.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:34.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:34.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:34.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:34.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:34.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:34.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:34.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:34.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:34.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:34.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:34.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:34.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:34.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:34.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:35.411][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-03-02 00:48:35.472][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-03-02 00:48:35.476][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:35.478][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-03-02 00:48:35.481][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:35.483][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 00:48:35.485][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:35.487][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-03-02 00:48:35.489][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:35.491][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 00:48:35.493][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-02 00:48:35.495][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 00:48:35.496][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:35.498][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-03-02 00:48:35.500][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 00:48:35.502][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-03-02 00:48:35.502][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-03-02 00:48:35.502][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-03-02 00:48:35.502][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-03-02 00:48:35.502][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-03-02 00:48:35.502][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-03-02 00:48:35.502][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-03-02 00:48:35.502][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-03-02 00:48:35.502][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-03-02 00:48:35.502][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-03-02 00:48:35.502][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-03-02 00:48:35.502][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-03-02 00:48:35.502][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-03-02 00:48:35.502][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-03-02 00:48:35.502][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-03-02 00:48:35.502][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-03-02 00:48:35.502][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-03-02 00:48:35.502][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-03-02 00:48:35.506][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:35.507][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 00:48:35.507][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-03-02 00:48:35.507][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-03-02 00:48:35.509][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-02 00:48:35.511][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:35.513][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:35.515][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 00:48:35.517][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:35.519][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:35.520][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 00:48:35.522][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-02 00:48:35.522][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-03-02 00:48:35.524][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 00:48:35.529][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 00:48:35.531][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:35.533][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:35.548][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-03-02 00:48:35.552][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-02 00:48:35.556][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-02 00:48:35.560][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-02 00:48:35.563][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-02 00:48:35.604][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-03-02 00:48:35.607][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-03-02 00:48:35.614][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-02 00:48:35.622][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-02 00:48:35.631][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 00:48:35.633][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 00:48:35.636][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-03-02 00:48:35.639][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-03-02 00:48:35.642][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-02 00:48:35.642][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-03-02 00:48:35.644][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 00:48:35.645][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 00:48:35.647][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-03-02 00:48:35.649][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-03-02 00:48:35.651][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-02 00:48:35.695][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-02 00:48:35.697][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 00:48:35.699][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 00:48:35.702][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-02 00:48:35.704][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 00:48:35.706][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-03-02 00:48:35.721][biodb::testThat]
biodb.INFO [2024-03-02 00:48:35.723][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-03-02 00:48:35.724][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 00:48:35.725][biodb::testThat]
biodb.TRACE[2024-03-02 00:48:36.478][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-03-02 00:48:36.481][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-02 00:48:36.487][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-02 00:48:36.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 00:48:36.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:36.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:36.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:36.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:36.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:36.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 00:48:36.532][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:36.535][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:36.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.540][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:36.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:36.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.581][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:36.582][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:36.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.585][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.637][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:36.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:36.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.648][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:36.650][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:36.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.655][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.657][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:36.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:36.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.667][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:36.669][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:36.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.671][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.675][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:36.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:36.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:36.687][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:36.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.693][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:36.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:36.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.706][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:36.708][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:36.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.712][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:36.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:36.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.720][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:36.722][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:36.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.725][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.728][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:36.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:36.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.743][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:36.745][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:36.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.747][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:36.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:36.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.754][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:36.755][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:36.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.758][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:36.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:36.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.768][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:36.770][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:36.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.772][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:36.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:36.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.779][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:36.780][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:36.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.784][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:36.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:36.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.793][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:36.795][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:36.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.799][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:36.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:36.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.810][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:36.812][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:36.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.814][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:36.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:36.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.825][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:36.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:36.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.833][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:36.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:36.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.844][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:36.845][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:36.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.848][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:36.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:36.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.854][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:36.855][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:36.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.859][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.862][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:36.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.872][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:36.873][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:36.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.878][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:36.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:36.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.887][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-02 00:48:36.888][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:36.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.892][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.895][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-02 00:48:36.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:36.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:36.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:36.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:36.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:36.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:36.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:36.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:36.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:36.998][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:37.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:37.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.005][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:37.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:37.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.011][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:37.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:37.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.018][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:37.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:37.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.026][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:37.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:37.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.034][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:37.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:37.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:37.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:37.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:37.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:37.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:37.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:37.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:37.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:37.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:37.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:37.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:37.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:37.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:37.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:37.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:37.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:37.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:37.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:37.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:37.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:37.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:37.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:37.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:37.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:37.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:37.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:37.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:37.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:37.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:37.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:37.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.164][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:37.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:37.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.173][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:37.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:37.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.183][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:37.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:37.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.191][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:37.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:37.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.200][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:37.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:37.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:37.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:37.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:37.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:37.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:37.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:37.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:37.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:37.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:37.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:37.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:37.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:37.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:37.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:37.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.271][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:37.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:37.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.279][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:37.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:37.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.287][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:37.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:37.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:37.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:37.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:37.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:37.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:37.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:37.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:37.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:37.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:37.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:37.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:37.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:37.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:37.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:37.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:37.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:37.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:37.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:37.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.369][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:37.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:37.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.378][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:37.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:37.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.384][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:37.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:37.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:37.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:37.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:37.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:37.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.407][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:37.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:37.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.415][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-02 00:48:37.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:37.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:37.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:37.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:37.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:37.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:37.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:37.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.444][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-02 00:48:37.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:37.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:37.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:37.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:37.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:37.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:37.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:37.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.507][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:37.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:37.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:37.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:37.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.524][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:37.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:37.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.533][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:37.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:37.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:37.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:37.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.551][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:37.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:37.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:37.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:37.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:37.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:37.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:37.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:37.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:37.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:37.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:37.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:37.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:37.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:37.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:37.614][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-03-02 00:48:37.619][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 00:48:37.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 00:48:37.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.625][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 00:48:37.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 00:48:37.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.632][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 00:48:37.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 00:48:37.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.638][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 00:48:37.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 00:48:37.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:37.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:37.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.716][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:37.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:37.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:37.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:37.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:37.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:37.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:37.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:37.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:37.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:37.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:37.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:37.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:37.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:37.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.792][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:37.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:37.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.801][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:37.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:37.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:37.814][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:37.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:37.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:37.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:38.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:38.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:38.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:38.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:38.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:38.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.044][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:38.047][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:38.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.049][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:38.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:38.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.076][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:38.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:38.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.084][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:38.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:38.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.101][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:38.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:38.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.109][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:38.112][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:38.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.116][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.118][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:38.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:38.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:38.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:38.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:38.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:38.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:38.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:38.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.174][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:38.176][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:38.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.180][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:38.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:38.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:38.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:38.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:38.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:38.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:38.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:38.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.236][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:38.238][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:38.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.242][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:38.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:38.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:38.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:38.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:38.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:38.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:38.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:38.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:38.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:38.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.302][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:38.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:38.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.327][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:38.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:38.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.336][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:38.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:38.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.346][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:38.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:38.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.356][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:38.359][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:38.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.363][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.365][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:38.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:38.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.390][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:38.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:38.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:38.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:38.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.407][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:38.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:38.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.423][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:38.425][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:38.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.429][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:38.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:38.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.454][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:38.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:38.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.461][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:38.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:38.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.469][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:38.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:38.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.477][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:38.479][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:38.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.483][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.484][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:38.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:38.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.508][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:38.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:38.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:38.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:38.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:38.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:38.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.540][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:38.542][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:38.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.547][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.549][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:38.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:38.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.590][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:38.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:38.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.598][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:38.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:38.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.606][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:38.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:38.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.615][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:38.617][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:38.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.620][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.622][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:38.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:38.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:38.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:38.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:38.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:38.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:38.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:38.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.671][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:38.674][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:38.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.678][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:38.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:38.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:38.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:38.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:38.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:38.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:38.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:38.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.735][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:38.738][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:38.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.750][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:38.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:38.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:38.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:38.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:38.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:38.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:38.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:38.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.822][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:38.824][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:38.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.826][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:38.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:38.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:38.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:38.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:38.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:38.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:38.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:38.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.906][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:38.908][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:38.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.911][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:38.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:38.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:38.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:38.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:38.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:38.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.960][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:38.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:38.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.970][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:38.972][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:38.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.976][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:38.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:38.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:38.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:38.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:39.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:39.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:39.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:39.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:39.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:39.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.030][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:39.033][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:39.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.036][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:39.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:39.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:39.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:39.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:39.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:39.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:39.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:39.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.094][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:39.096][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:39.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.100][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:39.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:39.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.135][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:39.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:39.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.144][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:39.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:39.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.152][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:39.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:39.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.160][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:39.163][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:39.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.167][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.169][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:39.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:39.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.241][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:39.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:39.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.249][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.258][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:39.260][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:39.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.272][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.282][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:39.285][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:39.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.289][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.299][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:39.302][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:39.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.305][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.315][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:39.318][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:39.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.322][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.332][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:39.335][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:39.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.339][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.350][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:39.352][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:39.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.356][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.411][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:39.413][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:39.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.417][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.428][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:39.432][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:39.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.435][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.449][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:39.452][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:39.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.456][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.467][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:39.470][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:39.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.475][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.485][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:39.487][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:39.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.491][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.502][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:39.505][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:39.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.509][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.520][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:39.523][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:39.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.531][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.575][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:39.585][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:39.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.589][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.601][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:39.603][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:39.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.611][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.622][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:39.624][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:39.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.627][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:39.638][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:39.641][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:39.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:39.645][ef$get] fields variable is a list.
biodb.INFO [2024-03-02 00:48:39.690][biodb::testThat]
biodb.INFO [2024-03-02 00:48:39.692][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-03-02 00:48:39.694][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 00:48:39.696][biodb::testThat]
biodb.DEBUG[2024-03-02 00:48:39.723][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-03-02 00:48:39.733][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-02 00:48:40.061][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:40.069][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-02 00:48:40.074][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-03-02 00:48:40.078][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 00:48:40.473][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-03-02 00:48:40.474][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 00:48:40.525][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-02 00:48:40.528][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-02 00:48:40.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 00:48:40.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:40.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:40.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:40.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:40.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:40.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 00:48:40.562][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:40.564][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:40.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.568][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:40.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:40.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.580][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:40.582][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:40.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.587][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.589][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:40.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:40.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.598][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:40.600][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:40.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.605][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.607][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:40.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:40.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.620][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:40.622][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:40.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.626][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.628][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:40.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:40.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.651][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:40.653][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:40.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.656][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:40.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:40.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.668][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:40.672][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:40.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.677][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:40.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:40.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.688][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:40.690][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:40.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.694][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.697][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:40.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:40.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.707][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:40.710][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:40.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.716][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:40.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:40.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.735][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:40.741][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:40.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.743][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:40.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:40.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.760][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:40.762][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:40.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.766][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:40.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:40.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.791][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:40.794][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:40.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.798][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.801][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:40.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:40.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.811][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:40.813][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:40.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.817][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:40.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:40.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.827][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:40.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:40.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.833][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:40.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:40.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.843][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:40.845][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:40.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.850][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:40.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:40.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.860][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:40.861][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:40.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.867][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.912][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:40.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:40.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.926][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:40.928][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:40.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.931][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.934][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:40.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:40.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.954][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:40.957][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:40.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.961][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.964][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:40.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:40.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.973][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-02 00:48:40.975][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:40.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.979][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.981][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-02 00:48:40.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:40.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:40.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:40.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:40.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:40.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:41.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:41.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:41.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:41.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.061][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:41.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:41.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.080][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:41.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:41.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.096][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:41.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:41.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.105][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:41.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:41.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.113][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:41.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:41.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.119][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:41.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:41.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:41.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:41.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:41.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:41.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:41.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:41.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:41.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:41.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:41.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:41.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:41.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:41.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:41.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:41.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:41.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:41.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:41.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:41.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:41.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:41.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:41.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:41.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:41.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:41.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:41.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:41.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:41.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:41.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:41.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:41.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.295][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:41.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:41.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.305][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:41.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:41.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.314][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:41.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:41.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:41.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:41.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:41.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:41.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:41.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:41.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:41.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:41.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:41.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:41.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:41.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:41.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:41.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:41.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:41.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:41.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:41.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:41.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.395][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:41.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:41.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.403][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:41.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:41.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.412][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:41.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:41.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:41.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:41.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:41.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:41.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:41.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:41.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:41.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:41.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:41.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:41.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.473][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:41.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:41.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:41.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:41.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:41.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:41.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:41.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:41.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.510][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:41.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:41.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.520][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:41.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:41.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.530][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:41.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:41.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:41.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:41.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:41.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:41.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.554][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:41.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:41.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.561][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-02 00:48:41.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:41.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:41.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:41.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:41.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:41.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:41.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:41.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.592][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-02 00:48:41.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:41.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:41.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:41.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:41.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:41.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:41.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:41.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:41.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:41.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:41.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:41.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.649][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:41.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:41.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.655][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:41.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:41.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:41.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:41.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.672][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:41.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:41.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:41.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:41.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:41.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:41.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:41.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:41.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:41.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:41.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:41.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:41.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:41.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:41.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:41.766][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-03-02 00:48:41.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-03-02 00:48:41.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-03-02 00:48:41.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-03-02 00:48:41.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-03-02 00:48:41.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-03-02 00:48:41.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-03-02 00:48:41.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 00:48:41.807][biodb::testThat]
biodb.INFO [2024-03-02 00:48:41.809][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-03-02 00:48:41.810][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 00:48:41.811][biodb::testThat]
biodb.TRACE[2024-03-02 00:48:41.816][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:41.842][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:41.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.846][ef$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:41.848][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-03-02 00:48:41.930][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:41.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:41.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:41.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:41.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:41.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:41.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:41.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:41.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:41.964][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-03-02 00:48:41.967][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-03-02 00:48:41.968][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-03-02 00:48:41.970][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-03-02 00:48:41.973][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:42.013][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:42.016][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-02 00:48:42.019][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:42.021][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-02 00:48:42.024][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-02 00:48:42.027][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-02 00:48:42.030][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-02 00:48:42.032][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-02 00:48:42.035][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-02 00:48:42.037][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-02 00:48:42.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:42.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:42.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:42.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:42.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:42.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:42.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:42.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:42.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:42.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:42.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:42.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:42.111][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-02 00:48:42.113][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-02 00:48:42.115][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-03-02 00:48:42.146][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:42.148][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:42.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.187][ef$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:42.191][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-03-02 00:48:42.231][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:42.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:42.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:42.277][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:42.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:42.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:42.288][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:42.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:42.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:42.304][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-03-02 00:48:42.433][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-03-02 00:48:42.436][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-03-02 00:48:42.438][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-03-02 00:48:42.468][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:42.489][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:42.492][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-02 00:48:42.496][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:42.498][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-02 00:48:42.537][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-02 00:48:42.540][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-02 00:48:42.550][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-02 00:48:42.552][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-02 00:48:42.554][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-02 00:48:42.557][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-02 00:48:42.560][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:42.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:42.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:42.570][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:42.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:42.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:42.581][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:42.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:42.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:42.593][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:42.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:42.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:42.608][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-02 00:48:42.610][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-02 00:48:42.612][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-03-02 00:48:42.646][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:42.649][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:42.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.653][ef$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:42.656][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-03-02 00:48:42.687][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:42.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:42.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:42.698][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:42.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:42.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:42.712][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:42.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:42.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:42.727][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-03-02 00:48:42.730][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-03-02 00:48:42.733][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-03-02 00:48:42.736][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-03-02 00:48:42.739][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:42.743][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:42.746][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-02 00:48:42.750][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:42.752][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-02 00:48:42.756][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-02 00:48:42.758][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-02 00:48:42.761][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-02 00:48:42.763][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-02 00:48:42.765][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-02 00:48:42.767][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-02 00:48:42.771][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:42.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:42.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:42.781][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:42.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:42.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:42.799][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:42.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:42.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:42.806][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:42.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:42.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:42.814][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-02 00:48:42.817][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-02 00:48:42.819][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-03-02 00:48:42.853][biodb::testThat]
biodb.INFO [2024-03-02 00:48:42.854][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-03-02 00:48:42.856][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 00:48:42.857][biodb::testThat]
biodb.TRACE[2024-03-02 00:48:42.908][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:42.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:42.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:42.918][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:42.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:42.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:42.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:42.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:42.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:42.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:42.995][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-03-02 00:48:42.998][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-03-02 00:48:43.000][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-03-02 00:48:43.004][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:43.007][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:43.010][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-02 00:48:43.014][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:43.016][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-02 00:48:43.018][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-02 00:48:43.021][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-02 00:48:43.023][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-02 00:48:43.025][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-02 00:48:43.027][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-02 00:48:43.029][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-02 00:48:43.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:43.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:43.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:43.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:43.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:43.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:43.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:43.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:43.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:43.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:43.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:43.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:43.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:43.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:43.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:43.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:43.089][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-02 00:48:43.091][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-03-02 00:48:43.159][biodb::testThat]
biodb.INFO [2024-03-02 00:48:43.162][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-03-02 00:48:43.164][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 00:48:43.166][biodb::testThat]
biodb.TRACE[2024-03-02 00:48:43.213][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 00:48:43.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 00:48:43.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:43.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:43.249][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 00:48:43.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 00:48:43.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:43.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:43.259][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 00:48:43.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 00:48:43.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:43.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:43.268][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 00:48:43.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 00:48:43.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:43.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:43.375][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 00:48:43.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 00:48:43.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:43.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:43.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-03-02 00:48:43.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-03-02 00:48:43.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:43.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:43.433][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-03-02 00:48:43.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-03-02 00:48:43.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:43.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:43.442][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-03-02 00:48:43.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-03-02 00:48:43.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:43.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 00:48:43.956][biodb::testThat]
biodb.INFO [2024-03-02 00:48:43.959][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-03-02 00:48:43.960][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 00:48:43.962][biodb::testThat]
biodb.INFO [2024-03-02 00:48:44.053][biodb::testThat]
biodb.INFO [2024-03-02 00:48:44.055][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-03-02 00:48:44.058][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 00:48:44.060][biodb::testThat]
biodb.INFO [2024-03-02 00:48:44.079][biodb::testThat]
biodb.INFO [2024-03-02 00:48:44.081][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-03-02 00:48:44.084][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 00:48:44.086][biodb::testThat]
biodb.DEBUG[2024-03-02 00:48:44.093][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-03-02 00:48:47.494][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-03-02 00:48:47.648][biodb::testThat]
biodb.INFO [2024-03-02 00:48:47.651][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-03-02 00:48:47.653][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 00:48:47.656][biodb::testThat]
biodb.DEBUG[2024-03-02 00:48:48.257][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-03-02 00:48:48.321][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:48.324][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:48.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.328][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:48.331][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:48.333][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:48.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.338][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:48.340][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:48.343][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:48.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.348][ef$get] fields variable is a list.
biodb.INFO [2024-03-02 00:48:48.352][biodb::testThat]
biodb.INFO [2024-03-02 00:48:48.354][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-03-02 00:48:48.357][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 00:48:48.360][biodb::testThat]
biodb.DEBUG[2024-03-02 00:48:48.364][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-03-02 00:48:48.505][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-02 00:48:48.530][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:48.534][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-02 00:48:48.574][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-03-02 00:48:48.577][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 00:48:48.580][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 00:48:48.582][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 00:48:48.586][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:48.589][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-02 00:48:48.591][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-02 00:48:48.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 00:48:48.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:48.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:48.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:48.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:48.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:48.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 00:48:48.633][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:48.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:48.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:48.643][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:48.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:48.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:48.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:48.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:48.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:48.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:48.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:48.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:48.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:48.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:48.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:48.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:48.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:48.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:48.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:48.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:48.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:48.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:48.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:48.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:48.742][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-03-02 00:48:48.744][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-03-02 00:48:48.785][biodb::testThat]
biodb.INFO [2024-03-02 00:48:48.786][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-03-02 00:48:48.788][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 00:48:48.790][biodb::testThat]
biodb.DEBUG[2024-03-02 00:48:48.808][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-03-02 00:48:48.810][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-03-02 00:48:48.812][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-02 00:48:48.815][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:48.818][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-02 00:48:48.822][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-03-02 00:48:48.825][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-03-02 00:48:48.827][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-03-02 00:48:48.833][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 00:48:48.836][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:48.838][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-02 00:48:48.841][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-02 00:48:48.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 00:48:48.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:48.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:48.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:48.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:48.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:48.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 00:48:48.874][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:48.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:48.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:48.883][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:48.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:48.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:48.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:48.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:48.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:48.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:48.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:48.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:48.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:48.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:48.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:48.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:48.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:48.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:48.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:48.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:48.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:48.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:48.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:48.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:48.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:48.946][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-03-02 00:48:48.948][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-03-02 00:48:48.950][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-03-02 00:48:48.986][biodb::testThat]
biodb.INFO [2024-03-02 00:48:48.988][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-03-02 00:48:48.990][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 00:48:48.992][biodb::testThat]
biodb.INFO [2024-03-02 00:48:49.044][biodb::testThat]
biodb.INFO [2024-03-02 00:48:49.046][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-03-02 00:48:49.048][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 00:48:49.050][biodb::testThat]
biodb.DEBUG[2024-03-02 00:48:49.054][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:49.060][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:49.063][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-02 00:48:49.066][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:49.068][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-02 00:48:49.071][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-02 00:48:49.085][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-02 00:48:49.087][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-02 00:48:49.089][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-03-02 00:48:49.108][biodb::testThat]
biodb.INFO [2024-03-02 00:48:49.110][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-03-02 00:48:49.112][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 00:48:49.113][biodb::testThat]
biodb.DEBUG[2024-03-02 00:48:49.116][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:49.118][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:49.121][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-02 00:48:49.124][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:49.126][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-02 00:48:49.129][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-02 00:48:49.133][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-02 00:48:49.135][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-02 00:48:49.136][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-03-02 00:48:49.153][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:49.155][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:49.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:49.159][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:49.161][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:49.163][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:49.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:49.167][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:49.169][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:49.173][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:49.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:49.178][ef$get] fields variable is a list.
biodb.INFO [2024-03-02 00:48:49.180][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-02 00:48:49.182][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-03-02 00:48:49.199][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-03-02 00:48:49.201][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-02 00:48:49.203][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:49.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:49.207][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:49.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:49.211][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-02 00:48:49.221][biodb::testContext]
biodb.INFO [2024-03-02 00:48:49.224][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 00:48:49.226][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-03-02 00:48:49.227][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 00:48:49.228][biodb::testContext]
biodb.INFO [2024-03-02 00:48:49.235][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.11.0.
biodb.DEBUG[2024-03-02 00:48:49.239][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-02 00:48:49.245][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 00:48:49.247][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-02 00:48:49.256][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-02 00:48:49.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.263][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-02 00:48:49.265][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-02 00:48:49.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.272][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-02 00:48:49.274][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-02 00:48:49.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.280][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-02 00:48:49.282][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-02 00:48:49.285][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-02 00:48:49.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.295][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-02 00:48:49.297][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-02 00:48:49.300][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-02 00:48:49.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.307][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-02 00:48:49.309][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-02 00:48:49.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.318][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-02 00:48:49.320][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-02 00:48:49.323][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-02 00:48:49.325][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.332][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-02 00:48:49.334][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-02 00:48:49.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.342][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-02 00:48:49.344][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-02 00:48:49.346][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-02 00:48:49.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.353][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-02 00:48:49.355][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-02 00:48:49.357][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-02 00:48:49.359][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-02 00:48:49.361][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-02 00:48:49.363][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-02 00:48:49.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.372][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-02 00:48:49.373][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-02 00:48:49.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.381][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-02 00:48:49.383][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-02 00:48:49.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.394][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-02 00:48:49.395][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-02 00:48:49.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.403][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-02 00:48:49.405][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-02 00:48:49.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.413][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-02 00:48:49.415][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-02 00:48:49.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.423][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-02 00:48:49.425][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-02 00:48:49.445][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-02 00:48:49.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.453][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-02 00:48:49.455][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-02 00:48:49.457][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-02 00:48:49.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.465][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-02 00:48:49.470][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:49.472][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-02 00:48:49.474][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:49.476][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 00:48:49.481][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:49.483][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 00:48:49.486][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:49.488][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 00:48:49.490][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 00:48:49.492][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 00:48:49.495][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:49.497][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-02 00:48:49.499][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 00:48:49.502][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:49.512][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:49.515][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 00:48:49.515][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 00:48:49.515][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 00:48:49.515][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-02 00:48:49.515][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-02 00:48:49.518][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 00:48:49.520][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:49.522][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:49.524][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 00:48:49.527][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:49.529][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:49.530][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 00:48:49.532][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:49.534][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 00:48:49.535][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 00:48:49.538][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:49.541][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:49.544][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-02 00:48:49.550][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:49.552][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-02 00:48:49.556][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:49.558][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 00:48:49.561][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:49.564][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 00:48:49.567][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:49.569][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 00:48:49.571][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-02 00:48:49.573][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 00:48:49.575][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:49.578][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-02 00:48:49.580][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 00:48:49.582][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:49.584][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:49.587][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 00:48:49.587][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 00:48:49.587][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 00:48:49.587][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-02 00:48:49.587][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-02 00:48:49.589][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 00:48:49.591][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:49.593][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:49.595][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 00:48:49.597][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:49.600][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:49.602][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 00:48:49.604][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:49.609][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 00:48:49.612][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 00:48:49.614][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:49.616][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:49.619][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-02 00:48:49.624][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:49.627][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-02 00:48:49.629][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:49.631][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 00:48:49.633][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:49.640][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 00:48:49.641][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:49.643][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 00:48:49.646][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 00:48:49.647][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 00:48:49.649][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:49.650][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-02 00:48:49.651][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 00:48:49.653][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:49.655][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:49.658][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:49.660][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 00:48:49.661][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:49.663][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:49.664][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 00:48:49.666][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:49.669][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:49.672][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 00:48:49.674][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:49.677][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 00:48:49.678][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 00:48:49.680][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:49.682][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:49.685][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-02 00:48:49.688][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:49.690][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-02 00:48:49.691][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:49.693][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 00:48:49.694][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:49.695][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 00:48:49.696][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:49.698][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 00:48:49.700][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-02 00:48:49.702][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 00:48:49.703][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:49.705][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-02 00:48:49.706][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 00:48:49.708][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:49.710][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:49.712][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:49.714][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 00:48:49.716][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:49.718][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:49.720][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 00:48:49.723][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:49.725][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:49.729][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 00:48:49.731][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:49.733][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 00:48:49.735][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 00:48:49.737][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:49.739][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:49.742][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 00:48:49.744][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:49.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:49.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:49.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:49.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:49.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:49.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:49.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:49.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:49.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:49.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:49.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:49.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:49.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:49.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:49.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:49.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:49.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:49.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:49.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:49.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:49.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:49.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:49.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:49.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:49.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:49.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:49.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:49.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:49.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:49.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:49.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:49.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.912][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:49.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:49.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:49.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:49.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:49.921][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-02 00:48:49.924][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-02 00:48:49.928][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-02 00:48:49.931][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-02 00:48:49.934][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-02 00:48:49.936][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-02 00:48:49.938][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-02 00:48:49.943][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-02 00:48:49.946][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-02 00:48:49.949][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-02 00:48:49.951][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-02 00:48:49.956][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-02 00:48:49.960][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-02 00:48:49.963][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-02 00:48:49.967][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-02 00:48:49.970][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-02 00:48:49.974][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-02 00:48:49.977][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-02 00:48:49.980][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-02 00:48:49.982][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-02 00:48:49.992][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-02 00:48:49.995][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-02 00:48:49.999][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-02 00:48:50.001][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-02 00:48:50.002][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-02 00:48:50.004][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-02 00:48:50.007][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-02 00:48:50.010][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-02 00:48:50.012][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-02 00:48:50.014][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-02 00:48:50.016][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-02 00:48:50.018][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-02 00:48:50.021][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-02 00:48:50.024][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-02 00:48:50.025][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-02 00:48:50.028][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-02 00:48:50.030][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-02 00:48:50.034][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-02 00:48:50.037][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-02 00:48:50.044][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-02 00:48:50.047][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-02 00:48:50.050][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-02 00:48:50.054][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-02 00:48:50.057][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-02 00:48:50.060][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-02 00:48:50.064][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-02 00:48:50.067][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-02 00:48:50.070][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-02 00:48:50.073][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-02 00:48:50.077][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-02 00:48:50.080][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-02 00:48:50.085][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-02 00:48:50.089][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-02 00:48:50.092][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-02 00:48:50.094][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-02 00:48:50.095][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-02 00:48:50.097][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-02 00:48:50.099][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-02 00:48:50.100][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-02 00:48:50.103][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-02 00:48:50.105][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-02 00:48:50.108][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-02 00:48:50.110][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-02 00:48:50.114][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-02 00:48:50.117][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-02 00:48:50.120][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-02 00:48:50.122][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-02 00:48:50.123][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-02 00:48:50.126][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-02 00:48:50.129][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-02 00:48:50.132][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-02 00:48:50.135][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-02 00:48:50.142][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-02 00:48:50.145][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-02 00:48:50.148][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-02 00:48:50.151][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-02 00:48:50.154][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-02 00:48:50.157][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-02 00:48:50.160][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-02 00:48:50.163][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-02 00:48:50.166][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-02 00:48:50.169][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-02 00:48:50.173][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-02 00:48:50.177][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-02 00:48:50.180][initialize] This is biodb version 1.11.0.
biodb.DEBUG[2024-03-02 00:48:50.182][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 00:48:50.184][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:50.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:50.188][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:50.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:50.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:50.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:50.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:50.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:50.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:50.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:50.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:50.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:50.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:50.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:50.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:50.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:50.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:50.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:50.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:50.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:50.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:50.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:50.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:50.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:50.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:50.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:50.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:50.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:50.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:50.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:50.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:50.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:50.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:50.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:50.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:50.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:50.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:50.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:50.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:50.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:50.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:50.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:50.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:50.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:50.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:50.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:50.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:50.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:50.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:50.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:50.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:50.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:50.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:50.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:50.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:50.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:50.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:50.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:50.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:50.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:50.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:50.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:50.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:50.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:50.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:50.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:50.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:50.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:50.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:50.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:50.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:50.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:50.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:50.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:50.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:50.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:50.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:50.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:50.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:50.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:50.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:50.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:50.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:50.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:50.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:50.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:50.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:50.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:50.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:50.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:50.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:50.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:50.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:50.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:50.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:50.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:50.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:50.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:50.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:50.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:50.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:50.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:50.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:50.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:50.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:50.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:50.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:50.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:50.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:50.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:50.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:50.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:50.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:50.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:50.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:50.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:50.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:50.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:50.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:50.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:50.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:50.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:50.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:50.465][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-03-02 00:48:50.476][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-03-02 00:48:50.480][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:50.482][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-03-02 00:48:50.484][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:50.486][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 00:48:50.488][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:50.490][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-03-02 00:48:50.492][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:50.494][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 00:48:50.498][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-02 00:48:50.505][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 00:48:50.508][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:50.512][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-03-02 00:48:50.514][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 00:48:50.516][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-03-02 00:48:50.516][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-03-02 00:48:50.516][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-03-02 00:48:50.516][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-03-02 00:48:50.516][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-03-02 00:48:50.516][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-03-02 00:48:50.516][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-03-02 00:48:50.516][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-03-02 00:48:50.516][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-03-02 00:48:50.516][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-03-02 00:48:50.516][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-03-02 00:48:50.516][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-03-02 00:48:50.516][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-03-02 00:48:50.516][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-03-02 00:48:50.516][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-03-02 00:48:50.516][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-03-02 00:48:50.516][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-03-02 00:48:50.516][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-03-02 00:48:50.519][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:50.521][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 00:48:50.521][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-03-02 00:48:50.521][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-03-02 00:48:50.524][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-02 00:48:50.526][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:50.529][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:50.531][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 00:48:50.534][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:50.536][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:50.539][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 00:48:50.541][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-02 00:48:50.541][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-03-02 00:48:50.544][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 00:48:50.547][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 00:48:50.549][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:50.552][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:50.567][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-03-02 00:48:50.570][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-02 00:48:50.573][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-02 00:48:50.577][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-02 00:48:50.580][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-02 00:48:50.587][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-03-02 00:48:50.589][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-03-02 00:48:50.591][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-02 00:48:50.594][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-02 00:48:50.600][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 00:48:50.604][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 00:48:50.607][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-03-02 00:48:50.613][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-03-02 00:48:50.616][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-02 00:48:50.616][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-03-02 00:48:50.618][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 00:48:50.620][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 00:48:50.622][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-03-02 00:48:50.624][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-03-02 00:48:50.627][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-02 00:48:50.631][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-02 00:48:50.634][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 00:48:50.636][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 00:48:50.639][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-02 00:48:50.642][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 00:48:50.645][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-03-02 00:48:50.648][biodb::testThat]
biodb.INFO [2024-03-02 00:48:50.650][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-03-02 00:48:50.652][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 00:48:50.655][biodb::testThat]
biodb.DEBUG[2024-03-02 00:48:50.662][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:50.666][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:50.669][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-02 00:48:50.673][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:50.675][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-02 00:48:50.677][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-02 00:48:50.680][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-02 00:48:50.683][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-02 00:48:50.685][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-02 00:48:50.691][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-03-02 00:48:50.703][biodb::testThat]
biodb.INFO [2024-03-02 00:48:50.705][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-03-02 00:48:50.710][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 00:48:50.712][biodb::testThat]
biodb.DEBUG[2024-03-02 00:48:50.717][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-03-02 00:48:50.720][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-02 00:48:50.725][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:50.728][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-02 00:48:50.733][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-03-02 00:48:50.735][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 00:48:51.071][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-03-02 00:48:51.074][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 00:48:51.077][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-02 00:48:51.088][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-02 00:48:51.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 00:48:51.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:51.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:51.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:51.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:51.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:51.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 00:48:51.119][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:51.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:51.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.127][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:51.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:51.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.139][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:51.143][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:51.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.147][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.213][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:51.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:51.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.237][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:51.241][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:51.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.245][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.248][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:51.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:51.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.259][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:51.261][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:51.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.267][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.270][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:51.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:51.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:51.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:51.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.289][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:51.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:51.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.299][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:51.301][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:51.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.305][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:51.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:51.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.317][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:51.320][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:51.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.324][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.334][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:51.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:51.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.343][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:51.354][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:51.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.358][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:51.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:51.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.370][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:51.372][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:51.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.378][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:51.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:51.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.390][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:51.392][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:51.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.397][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:51.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:51.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.408][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:51.410][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:51.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.414][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:51.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:51.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.430][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:51.432][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:51.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.436][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:51.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:51.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.449][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:51.452][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:51.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.456][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:51.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:51.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.471][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:51.474][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:51.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.479][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:51.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:51.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.491][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:51.494][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:51.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.499][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:51.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:51.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.512][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:51.516][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:51.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.519][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.522][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:51.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:51.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.536][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:51.539][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:51.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.542][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:51.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:51.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.553][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-02 00:48:51.556][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:51.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.560][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.562][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-02 00:48:51.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:51.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:51.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:51.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:51.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:51.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:51.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:51.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.648][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:51.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:51.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.667][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:51.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:51.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.713][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:51.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:51.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.724][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:51.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:51.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.736][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:51.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:51.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.749][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:51.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:51.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:51.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:51.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.774][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:51.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:51.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:51.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:51.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:51.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:51.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:51.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:51.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:51.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:51.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:51.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:51.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:51.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:51.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:51.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:51.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:51.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:51.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:51.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:51.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:51.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:51.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:51.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:51.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:51.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:51.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:51.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:51.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.939][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:51.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:51.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.952][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:51.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:51.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.961][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:51.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:51.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.972][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:51.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:51.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:51.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:51.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:51.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:51.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:51.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:51.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:52.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:52.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:52.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:52.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:52.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:52.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:52.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:52.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:52.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:52.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:52.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:52.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.069][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:52.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:52.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.078][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:52.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:52.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.087][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:52.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:52.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:52.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:52.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:52.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:52.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:52.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:52.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:52.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:52.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:52.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:52.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:52.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:52.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:52.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:52.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:52.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:52.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:52.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:52.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.183][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:52.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:52.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.193][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:52.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:52.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.201][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:52.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:52.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:52.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:52.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:52.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:52.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:52.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:52.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.242][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-02 00:48:52.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:52.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:52.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:52.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:52.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:52.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:52.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:52.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.287][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-02 00:48:52.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:52.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:52.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:52.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:52.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:52.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.312][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:52.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:52.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:52.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:52.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:52.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:52.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.345][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:52.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:52.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.354][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:52.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:52.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:52.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:52.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.372][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:52.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:52.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:52.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:52.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:52.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:52.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:52.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:52.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:52.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:52.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:52.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:52.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:52.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:52.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:52.453][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-03-02 00:48:52.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:52.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:52.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:52.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:52.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:52.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:52.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:52.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:52.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-03-02 00:48:52.512][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-02 00:48:52.515][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-03-02 00:48:52.517][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-03-02 00:48:52.519][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-02 00:48:52.521][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:52.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:52.526][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:52.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:52.530][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:52.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-02 00:48:52.548][biodb::testContext]
biodb.INFO [2024-03-02 00:48:52.551][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 00:48:52.553][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-03-02 00:48:52.576][biodb::testContext] ********************************************************************************
biodb.INFO [2024-03-02 00:48:52.578][biodb::testContext]
biodb.INFO [2024-03-02 00:48:52.586][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.11.0.
biodb.DEBUG[2024-03-02 00:48:52.589][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-03-02 00:48:52.598][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 00:48:52.600][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-03-02 00:48:52.602][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-03-02 00:48:52.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:52.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:52.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:52.609][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-03-02 00:48:52.611][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-03-02 00:48:52.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:52.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:52.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:52.620][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-03-02 00:48:52.622][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-03-02 00:48:52.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:52.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:52.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:52.629][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-03-02 00:48:52.631][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-03-02 00:48:52.633][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-03-02 00:48:52.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:52.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:52.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:52.639][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-03-02 00:48:52.640][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-03-02 00:48:52.642][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-03-02 00:48:52.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:52.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:52.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:52.649][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-03-02 00:48:52.651][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-03-02 00:48:52.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:52.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:52.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:52.666][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-03-02 00:48:52.668][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-03-02 00:48:52.670][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-03-02 00:48:52.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:52.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:52.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:52.678][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-03-02 00:48:52.681][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-03-02 00:48:52.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:52.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:52.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:52.690][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-03-02 00:48:52.692][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-03-02 00:48:52.694][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-03-02 00:48:52.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:52.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:52.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:52.700][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-03-02 00:48:52.701][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-03-02 00:48:52.703][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-03-02 00:48:52.705][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-03-02 00:48:52.707][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-03-02 00:48:52.709][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-03-02 00:48:52.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:52.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:52.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:52.716][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-03-02 00:48:52.718][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-03-02 00:48:52.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:52.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:52.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:52.722][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-03-02 00:48:52.724][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-03-02 00:48:52.747][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:52.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:52.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:52.751][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-03-02 00:48:52.753][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-03-02 00:48:52.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:52.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:52.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:52.760][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-03-02 00:48:52.762][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-03-02 00:48:52.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:52.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:52.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:52.770][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-03-02 00:48:52.773][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-03-02 00:48:52.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:52.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:52.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:52.781][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-03-02 00:48:52.783][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-03-02 00:48:52.798][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-03-02 00:48:52.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:52.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:52.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:52.805][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-03-02 00:48:52.829][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-03-02 00:48:52.832][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-03-02 00:48:52.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:52.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:52.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:52.846][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-03-02 00:48:52.850][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:52.852][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-03-02 00:48:52.853][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:52.855][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 00:48:52.857][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:52.859][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 00:48:52.861][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:52.864][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 00:48:52.866][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 00:48:52.868][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 00:48:52.870][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:52.872][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-03-02 00:48:52.875][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 00:48:52.877][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:52.880][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:52.881][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 00:48:52.881][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 00:48:52.881][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 00:48:52.881][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-02 00:48:52.881][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-02 00:48:52.883][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 00:48:52.884][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:52.885][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:52.886][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 00:48:52.887][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:52.889][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:52.891][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 00:48:52.893][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:52.894][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 00:48:52.917][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 00:48:52.920][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:52.922][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:52.925][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-03-02 00:48:52.930][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:52.933][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-03-02 00:48:52.936][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:52.939][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 00:48:52.942][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:52.944][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 00:48:52.946][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:52.947][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 00:48:52.949][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-02 00:48:52.951][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 00:48:52.953][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:52.956][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-03-02 00:48:52.959][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 00:48:52.961][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:52.963][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:52.966][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 00:48:52.966][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-03-02 00:48:52.966][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-03-02 00:48:52.966][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-03-02 00:48:52.966][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-03-02 00:48:52.968][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 00:48:52.971][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:52.973][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:52.975][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 00:48:52.977][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:52.979][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:52.980][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 00:48:52.982][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:52.984][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 00:48:52.985][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 00:48:52.987][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:52.990][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:52.992][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-03-02 00:48:52.996][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:53.014][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-03-02 00:48:53.016][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:53.018][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 00:48:53.020][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:53.022][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 00:48:53.025][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:53.027][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 00:48:53.029][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-03-02 00:48:53.032][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 00:48:53.034][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:53.036][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-03-02 00:48:53.038][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 00:48:53.041][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:53.043][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:53.045][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:53.048][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 00:48:53.051][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:53.053][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:53.056][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 00:48:53.058][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:53.060][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:53.063][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 00:48:53.065][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:53.067][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 00:48:53.068][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 00:48:53.070][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:53.072][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:53.075][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-03-02 00:48:53.078][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:53.081][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-03-02 00:48:53.083][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:53.085][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 00:48:53.087][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:53.089][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-03-02 00:48:53.091][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:53.105][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 00:48:53.108][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-03-02 00:48:53.110][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 00:48:53.113][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:53.121][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-03-02 00:48:53.123][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 00:48:53.126][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:53.128][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:53.130][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:53.132][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-03-02 00:48:53.134][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:53.136][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:53.139][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 00:48:53.141][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:53.143][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:53.146][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 00:48:53.148][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:53.150][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 00:48:53.152][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 00:48:53.154][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:53.156][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:53.158][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 00:48:53.160][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.163][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.229][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.388][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-03-02 00:48:53.393][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-03-02 00:48:53.397][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-03-02 00:48:53.410][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-03-02 00:48:53.414][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-03-02 00:48:53.418][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-02 00:48:53.421][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-03-02 00:48:53.424][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-03-02 00:48:53.427][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-03-02 00:48:53.431][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-02 00:48:53.434][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-02 00:48:53.437][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-03-02 00:48:53.440][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-03-02 00:48:53.442][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-03-02 00:48:53.446][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-03-02 00:48:53.449][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-02 00:48:53.475][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-03-02 00:48:53.479][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-03-02 00:48:53.483][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-03-02 00:48:53.487][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-03-02 00:48:53.491][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-03-02 00:48:53.494][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-03-02 00:48:53.497][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-03-02 00:48:53.501][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-03-02 00:48:53.504][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-03-02 00:48:53.508][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-03-02 00:48:53.512][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-03-02 00:48:53.515][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-03-02 00:48:53.519][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-03-02 00:48:53.522][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-03-02 00:48:53.525][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-03-02 00:48:53.529][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-03-02 00:48:53.532][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-03-02 00:48:53.535][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-03-02 00:48:53.539][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-03-02 00:48:53.542][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-03-02 00:48:53.544][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-03-02 00:48:53.547][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-03-02 00:48:53.550][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-03-02 00:48:53.553][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-03-02 00:48:53.556][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-03-02 00:48:53.572][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-03-02 00:48:53.576][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-03-02 00:48:53.579][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-03-02 00:48:53.582][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-03-02 00:48:53.584][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-03-02 00:48:53.586][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-03-02 00:48:53.588][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-03-02 00:48:53.591][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-03-02 00:48:53.594][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-03-02 00:48:53.597][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-03-02 00:48:53.600][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-03-02 00:48:53.603][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-03-02 00:48:53.606][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-03-02 00:48:53.609][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-03-02 00:48:53.612][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-03-02 00:48:53.616][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-03-02 00:48:53.619][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-03-02 00:48:53.622][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-03-02 00:48:53.626][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-03-02 00:48:53.628][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-03-02 00:48:53.630][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-03-02 00:48:53.633][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-03-02 00:48:53.636][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-03-02 00:48:53.637][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-03-02 00:48:53.639][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-03-02 00:48:53.641][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-03-02 00:48:53.643][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-03-02 00:48:53.644][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-03-02 00:48:53.647][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-03-02 00:48:53.651][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-03-02 00:48:53.654][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-03-02 00:48:53.658][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-03-02 00:48:53.670][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-03-02 00:48:53.673][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-03-02 00:48:53.675][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-03-02 00:48:53.678][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-03-02 00:48:53.681][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-03-02 00:48:53.684][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-03-02 00:48:53.687][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-03-02 00:48:53.690][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-03-02 00:48:53.693][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-03-02 00:48:53.696][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-03-02 00:48:53.700][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-03-02 00:48:53.703][initialize] This is biodb version 1.11.0.
biodb.DEBUG[2024-03-02 00:48:53.705][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-03-02 00:48:53.707][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.711][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:53.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:53.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:53.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:53.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:53.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:53.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:53.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:53.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:53.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:53.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:53.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:53.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:53.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:53.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:53.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:53.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:53.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:53.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:53.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:53.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:53.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:53.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:53.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:53.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:53.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:53.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:53.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:53.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:53.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:53.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:53.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:53.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-03-02 00:48:53.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:53.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:53.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:53.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:53.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:53.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:53.997][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-03-02 00:48:54.000][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-03-02 00:48:54.003][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:54.005][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-03-02 00:48:54.006][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:54.007][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-03-02 00:48:54.010][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:54.011][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-03-02 00:48:54.022][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:54.024][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-03-02 00:48:54.026][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-03-02 00:48:54.028][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-03-02 00:48:54.030][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:54.033][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-03-02 00:48:54.035][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-03-02 00:48:54.038][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-03-02 00:48:54.038][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-03-02 00:48:54.038][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-03-02 00:48:54.038][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-03-02 00:48:54.038][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-03-02 00:48:54.038][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-03-02 00:48:54.038][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-03-02 00:48:54.038][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-03-02 00:48:54.038][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-03-02 00:48:54.038][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-03-02 00:48:54.038][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-03-02 00:48:54.038][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-03-02 00:48:54.038][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-03-02 00:48:54.038][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-03-02 00:48:54.038][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-03-02 00:48:54.038][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-03-02 00:48:54.038][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-03-02 00:48:54.038][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-03-02 00:48:54.041][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-03-02 00:48:54.043][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-03-02 00:48:54.043][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-03-02 00:48:54.043][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-03-02 00:48:54.046][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-03-02 00:48:54.048][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:54.050][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:54.052][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-03-02 00:48:54.055][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-03-02 00:48:54.057][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-03-02 00:48:54.060][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-03-02 00:48:54.063][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-02 00:48:54.063][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-03-02 00:48:54.066][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 00:48:54.069][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 00:48:54.072][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-03-02 00:48:54.074][self$setPropertyValue]
biodb.DEBUG[2024-03-02 00:48:54.089][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-03-02 00:48:54.092][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-03-02 00:48:54.097][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-03-02 00:48:54.118][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-03-02 00:48:54.121][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-03-02 00:48:54.128][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-03-02 00:48:54.130][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-03-02 00:48:54.132][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-02 00:48:54.136][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-02 00:48:54.138][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 00:48:54.140][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 00:48:54.145][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-03-02 00:48:54.147][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-03-02 00:48:54.150][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-03-02 00:48:54.150][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-03-02 00:48:54.153][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-03-02 00:48:54.155][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-03-02 00:48:54.157][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-03-02 00:48:54.159][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-03-02 00:48:54.162][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-03-02 00:48:54.165][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-02 00:48:54.167][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 00:48:54.170][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 00:48:54.173][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-03-02 00:48:54.175][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-03-02 00:48:54.177][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-03-02 00:48:54.181][biodb::testThat]
biodb.INFO [2024-03-02 00:48:54.183][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2024-03-02 00:48:54.193][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-03-02 00:48:54.195][biodb::testThat]
biodb.DEBUG[2024-03-02 00:48:54.199][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-03-02 00:48:54.220][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-03-02 00:48:54.222][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-03-02 00:48:54.228][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:54.232][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:54.235][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-02 00:48:54.239][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:54.242][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-02 00:48:54.246][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-02 00:48:54.249][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-02 00:48:54.252][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-02 00:48:54.254][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-02 00:48:54.256][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-02 00:48:54.258][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-03-02 00:48:54.263][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-03-02 00:48:54.265][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-02 00:48:54.269][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:54.272][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-02 00:48:54.276][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-03-02 00:48:54.279][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 00:48:54.282][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-03-02 00:48:54.285][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 00:48:54.287][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-02 00:48:54.311][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-02 00:48:54.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 00:48:54.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:54.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:54.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:54.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:54.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:54.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 00:48:54.344][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:54.347][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:54.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.351][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:54.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:54.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.360][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:54.363][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:54.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.366][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.417][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:54.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:54.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.425][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:54.427][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:54.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.431][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.433][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:54.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:54.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.449][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:54.451][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:54.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.455][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.458][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:54.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:54.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.487][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:54.488][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:54.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.492][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:54.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:54.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.504][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:54.506][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:54.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.510][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:54.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:54.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.521][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:54.523][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:54.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.528][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.531][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:54.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:54.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.571][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:54.574][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:54.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.579][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:54.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:54.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.590][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:54.593][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:54.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.596][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:54.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:54.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.607][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:54.609][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:54.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.613][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:54.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:54.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.624][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:54.625][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:54.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.628][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:54.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:54.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.668][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:54.672][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:54.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.677][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:54.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:54.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.690][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:54.692][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:54.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.698][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:54.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:54.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.709][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:54.712][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:54.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.716][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:54.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:54.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.725][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:54.752][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:54.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.756][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.759][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:54.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:54.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.770][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:54.786][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:54.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.792][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.795][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:54.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:54.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.806][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:54.809][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:54.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.813][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:54.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:54.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.852][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-02 00:48:54.855][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:54.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.859][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.862][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-02 00:48:54.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:54.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:54.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:54.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:54.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:54.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:54.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:54.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.900][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:54.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:54.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.909][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:54.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:54.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.935][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:54.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:54.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.943][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:54.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:54.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.952][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:54.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:54.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.962][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:54.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:54.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:54.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:54.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:54.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:54.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:54.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:54.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:54.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:54.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:54.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:54.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:55.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:55.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:55.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:55.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:55.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:55.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:55.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:55.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:55.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:55.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:55.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:55.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:55.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:55.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:55.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:55.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:55.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:55.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:55.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:55.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:55.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.125][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:55.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:55.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.134][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:55.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:55.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.143][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:55.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:55.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:55.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:55.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:55.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:55.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.173][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:55.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:55.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:55.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:55.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:55.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:55.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:55.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:55.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:55.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:55.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:55.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:55.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:55.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:55.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.248][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:55.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:55.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.258][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:55.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:55.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.266][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:55.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:55.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:55.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:55.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:55.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:55.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:55.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:55.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:55.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:55.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:55.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:55.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:55.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:55.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:55.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:55.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:55.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:55.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:55.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:55.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.460][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:55.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:55.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.468][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:55.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:55.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.474][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:55.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:55.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.487][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:55.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:55.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.497][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:55.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:55.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:55.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:55.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.509][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-02 00:48:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:55.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:55.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:55.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:55.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:55.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:55.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:55.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.545][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-02 00:48:55.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:55.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:55.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:55.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:55.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:55.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.585][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:55.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:55.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:55.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:55.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:55.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:55.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.613][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:55.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:55.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.622][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:55.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:55.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:55.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:55.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.639][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:55.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:55.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:55.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:55.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:55.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:55.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:55.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:55.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:55.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:55.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:55.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:55.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:55.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:55.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:55.722][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-03-02 00:48:55.724][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:55.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:55.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:55.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:55.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.733][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:55.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:55.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.765][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:55.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:55.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:55.773][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-02 00:48:55.774][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-02 00:48:55.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 00:48:55.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:55.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:55.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:55.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:55.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:55.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:55.799][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-03-02 00:48:55.801][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-03-02 00:48:55.803][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:55.806][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-03-02 00:48:55.809][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-03-02 00:48:55.811][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-03-02 00:48:55.812][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-03-02 00:48:55.814][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-03-02 00:48:55.816][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-03-02 00:48:55.818][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-03-02 00:48:55.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 00:48:55.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:55.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:55.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:55.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:55.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:55.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 00:48:55.881][ef$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:55.883][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:55.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.887][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:55.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:55.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.899][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:55.902][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:55.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.906][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.909][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:55.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:55.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.915][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:55.917][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:55.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.951][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.954][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:55.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:55.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.962][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:55.965][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:55.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.968][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.971][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:55.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:55.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:55.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:55.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.986][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:55.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:55.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:55.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:55.998][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:56.008][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:56.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.011][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:56.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:56.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.045][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:56.047][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:56.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.051][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.053][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:56.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:56.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.062][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:56.064][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:56.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.068][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:56.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:56.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.078][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:56.080][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:56.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.084][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:56.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:56.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.130][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:56.132][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:56.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.136][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:56.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:56.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.146][ef$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:56.148][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:56.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.152][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.156][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:56.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:56.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.165][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:56.167][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:56.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.172][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:56.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:56.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.183][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:56.185][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:56.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.200][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:56.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:56.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.213][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:56.215][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:56.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.217][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:56.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:56.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.226][ef$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:56.228][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:56.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.232][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.234][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:56.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:56.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.243][ef$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:56.246][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:56.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.250][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.288][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:56.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:56.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.297][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:56.299][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:56.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.302][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:56.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:56.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.314][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-03-02 00:48:56.316][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:56.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.320][ef$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.322][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-03-02 00:48:56.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:56.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:56.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:56.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:56.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:56.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:56.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:56.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.381][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:56.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.390][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:56.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:56.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.397][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-03-02 00:48:56.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-03-02 00:48:56.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.406][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:56.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:56.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.414][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:56.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:56.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.420][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-03-02 00:48:56.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-03-02 00:48:56.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:56.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:56.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:56.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:56.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-03-02 00:48:56.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-03-02 00:48:56.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:56.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:56.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:56.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:56.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:56.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-03-02 00:48:56.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:56.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:56.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:56.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:56.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:56.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-03-02 00:48:56.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:56.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:56.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:56.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:56.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:56.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-03-02 00:48:56.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:56.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:56.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:56.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:56.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:56.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-03-02 00:48:56.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.625][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:56.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:56.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.635][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:56.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:56.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.654][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:56.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:56.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.665][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:56.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:56.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:56.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:56.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.681][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-03-02 00:48:56.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-03-02 00:48:56.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:56.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:56.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:56.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:56.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-03-02 00:48:56.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-03-02 00:48:56.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:56.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:56.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:56.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:56.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:56.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:56.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.772][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:56.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:56.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.781][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:56.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:56.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.812][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:56.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-03-02 00:48:56.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:56.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:56.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:56.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:56.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:56.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-03-02 00:48:56.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:56.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:56.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:56.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:56.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.901][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:56.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:56.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:56.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:56.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:56.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:56.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:56.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-03-02 00:48:56.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.936][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:56.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:56.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.942][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:56.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:56.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.948][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:56.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-03-02 00:48:56.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:56.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:56.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:57.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:57.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:57.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:57.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-03-02 00:48:57.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-03-02 00:48:57.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.027][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-02 00:48:57.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:57.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:57.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:57.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:57.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:57.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-03-02 00:48:57.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:57.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.097][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-03-02 00:48:57.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-03-02 00:48:57.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:57.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:57.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:57.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:57.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:57.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:57.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:57.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:57.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-03-02 00:48:57.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-03-02 00:48:57.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.169][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:57.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:57.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.178][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:57.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:57.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:57.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:57.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.197][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:57.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-03-02 00:48:57.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:57.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:57.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:57.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:57.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:57.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:57.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:57.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:57.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:57.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:57.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-03-02 00:48:57.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-03-02 00:48:57.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:57.278][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-03-02 00:48:57.280][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.289][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.295][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.331][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:57.342][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-02 00:48:57.344][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-03-02 00:48:57.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 00:48:57.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:57.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:57.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:57.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:57.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:57.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:57.378][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-03-02 00:48:57.380][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-03-02 00:48:57.383][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-03-02 00:48:57.387][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:57.389][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:57.392][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-02 00:48:57.395][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:57.422][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-02 00:48:57.425][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-02 00:48:57.427][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-02 00:48:57.429][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-02 00:48:57.431][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-02 00:48:57.433][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-02 00:48:57.434][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-02 00:48:57.437][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.444][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.452][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.461][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.469][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.475][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.507][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:57.515][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-02 00:48:57.517][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-02 00:48:57.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 00:48:57.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:57.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:57.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:57.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:57.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:57.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 00:48:57.535][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.544][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.553][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.596][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.602][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.611][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.618][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:57.633][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-03-02 00:48:57.635][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-02 00:48:57.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 00:48:57.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:57.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:57.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:57.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:57.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:57.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-03-02 00:48:57.700][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-03-02 00:48:57.703][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-03-02 00:48:57.706][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-03-02 00:48:57.709][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:57.713][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:57.715][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-03-02 00:48:57.719][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-03-02 00:48:57.721][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-03-02 00:48:57.723][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-03-02 00:48:57.725][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-03-02 00:48:57.727][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-03-02 00:48:57.728][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-03-02 00:48:57.730][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-03-02 00:48:57.731][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-03-02 00:48:57.734][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.769][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.778][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.786][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.794][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.803][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.810][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:57.815][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-03-02 00:48:57.817][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-03-02 00:48:57.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 00:48:57.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:57.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:57.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:57.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:57.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:57.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-03-02 00:48:57.863][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.868][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.874][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.883][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.891][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.896][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-03-02 00:48:57.933][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-03-02 00:48:57.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-03-02 00:48:57.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-03-02 00:48:57.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-03-02 00:48:57.942][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-03-02 00:48:57.950][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-03-02 00:48:57.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-03-02 00:48:57.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:57.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:57.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:57.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:57.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:57.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-03-02 00:48:58.018][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-03-02 00:48:58.020][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-03-02 00:48:58.023][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-03-02 00:48:58.025][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-03-02 00:48:58.026][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-03-02 00:48:58.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-03-02 00:48:58.029][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-03-02 00:48:58.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-03-02 00:48:58.032][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-03-02 00:48:58.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
18.190 1.254 30.905