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This page was generated on 2023-12-07 12:27:11 -0500 (Thu, 07 Dec 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_64R Under development (unstable) (2023-11-11 r85510) -- "Unsuffered Consequences" 4609
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-11-14 r85524 ucrt) -- "Unsuffered Consequences" 4369
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2023-11-11 r85510) -- "Unsuffered Consequences" 4375
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2023-11-01 r85459) -- "Unsuffered Consequences" 4262
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 122/2229HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bamsignals 1.35.0  (landing page)
Johannes Helmuth
Snapshot Date: 2023-12-06 14:00:17 -0500 (Wed, 06 Dec 2023)
git_url: https://git.bioconductor.org/packages/bamsignals
git_branch: devel
git_last_commit: b1662da
git_last_commit_date: 2023-10-24 10:42:09 -0500 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

INSTALL results for bamsignals on kunpeng2


To the developers/maintainers of the bamsignals package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bamsignals.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: bamsignals
Version: 1.35.0
Command: /home/biocbuild/R/R-4.4-devel-2023.11.02/bin/R CMD INSTALL bamsignals
StartedAt: 2023-12-06 20:15:27 -0000 (Wed, 06 Dec 2023)
EndedAt: 2023-12-06 20:16:09 -0000 (Wed, 06 Dec 2023)
EllapsedTime: 41.8 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /home/biocbuild/R/R-4.4-devel-2023.11.02/bin/R CMD INSTALL bamsignals
###
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* installing to library ‘/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library’
* installing *source* package ‘bamsignals’ ...
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 10.3.1’
using C++ compiler: ‘g++ (GCC) 10.3.1’
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/zlibbioc/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c CountSignals.cpp -o CountSignals.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/zlibbioc/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/zlibbioc/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c bamsignals.cpp -o bamsignals.o
bamsignals.cpp: In function ‘bool writeSamAsBamAndIndex(const string&, const string&)’:
bamsignals.cpp:499:9: warning: variable ‘iorval’ set but not used [-Wunused-but-set-variable]
  499 |     int iorval;
      |         ^~~~~~
gcc -I"/home/biocbuild/R/R-devel/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/include' -I'/home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/zlibbioc/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c bamsignals_init.c -o bamsignals_init.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-devel/lib -L/usr/local/lib -o bamsignals.so CountSignals.o RcppExports.o bamsignals.o bamsignals_init.o /home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/Rhtslib/usrlib/libhts.a -lcurl -L/home/biocbuild/R/R-devel/lib -lR
installing to /home/biocbuild/R/R-4.4-devel-2023.11.02/site-library/00LOCK-bamsignals/00new/bamsignals/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bamsignals)