Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-05-01 11:36:12 -0400 (Wed, 01 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" | 4753 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 beta (2024-04-14 r86421) -- "Puppy Cup" | 4518 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2189/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
TrajectoryGeometry 1.12.0 (landing page) Michael Shapiro
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the TrajectoryGeometry package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TrajectoryGeometry.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: TrajectoryGeometry |
Version: 1.12.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:TrajectoryGeometry.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings TrajectoryGeometry_1.12.0.tar.gz |
StartedAt: 2024-05-01 10:22:13 -0400 (Wed, 01 May 2024) |
EndedAt: 2024-05-01 10:28:14 -0400 (Wed, 01 May 2024) |
EllapsedTime: 360.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: TrajectoryGeometry.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:TrajectoryGeometry.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings TrajectoryGeometry_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/TrajectoryGeometry.Rcheck’ * using R version 4.4.0 beta (2024-04-15 r86425) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘TrajectoryGeometry/DESCRIPTION’ ... OK * this is package ‘TrajectoryGeometry’ version ‘1.12.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘TrajectoryGeometry’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE visualiseBranchPointStats: no visible binding for global variable ‘value’ visualiseBranchPointStats: no visible binding for global variable ‘logPValue’ visualiseTrajectoryStats: no visible binding for global variable ‘type’ visualiseTrajectoryStats: no visible binding for global variable ‘value’ Undefined global functions or variables: logPValue type value * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed testPathForDirectionality 10.818 0.068 10.887 analyseBranchPoint 10.298 0.064 10.361 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.19-bioc/meat/TrajectoryGeometry.Rcheck/00check.log’ for details.
TrajectoryGeometry.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL TrajectoryGeometry ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘TrajectoryGeometry’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TrajectoryGeometry)
TrajectoryGeometry.Rcheck/TrajectoryGeometry-Ex.timings
name | user | system | elapsed | |
analyseBranchPoint | 10.298 | 0.064 | 10.361 | |
analyseSingleCellTrajectory | 1.923 | 0.008 | 1.931 | |
circleOnTheUnitSphere | 0.002 | 0.000 | 0.001 | |
distanceBetweenTrajectories | 1.171 | 0.020 | 1.191 | |
findSphereClusterCenter | 0.055 | 0.004 | 0.058 | |
findSphericalDistance | 0.000 | 0.000 | 0.001 | |
generateRandomPaths | 0.000 | 0.001 | 0.001 | |
generateRandomUnitVector | 0 | 0 | 0 | |
getDistanceDataForPaths | 0.329 | 0.001 | 0.329 | |
getSphericalData | 0.049 | 0.000 | 0.049 | |
getStepLengths | 0 | 0 | 0 | |
orthonormalBasis | 0 | 0 | 0 | |
pathProgression | 0.001 | 0.000 | 0.001 | |
pathToSphericalData | 0.055 | 0.000 | 0.055 | |
plotPathProjectionCenterAndCircle | 0.115 | 0.004 | 0.097 | |
projectPathToSphere | 0.001 | 0.000 | 0.001 | |
samplePath | 0.005 | 0.000 | 0.005 | |
testPathForDirectionality | 10.818 | 0.068 | 10.887 | |
visualiseBranchPointStats | 0.921 | 0.008 | 0.930 | |
visualiseTrajectoryStats | 2.457 | 0.008 | 2.465 | |