| Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-05-03 11:38:55 -0400 (Fri, 03 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4660 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4391 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4422 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2033/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SummarizedBenchmark 2.23.0 (landing page) Patrick Kimes
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | see weekly results here | ||||||||||||
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To the developers/maintainers of the SummarizedBenchmark package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SummarizedBenchmark.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SummarizedBenchmark |
| Version: 2.23.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SummarizedBenchmark |
| StartedAt: 2024-05-01 23:07:04 -0400 (Wed, 01 May 2024) |
| EndedAt: 2024-05-01 23:14:51 -0400 (Wed, 01 May 2024) |
| EllapsedTime: 466.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SummarizedBenchmark ### ############################################################################## ############################################################################## * checking for file ‘SummarizedBenchmark/DESCRIPTION’ ... OK * preparing ‘SummarizedBenchmark’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘CaseStudy-RNAseqQuantification.Rmd’ using rmarkdown 2024-05-01 23:08:32.843 R[50622:397395074] XType: com.apple.fonts is not accessible. 2024-05-01 23:08:32.844 R[50622:397395074] XType: XTFontStaticRegistry is enabled. --- finished re-building ‘CaseStudy-RNAseqQuantification.Rmd’ --- re-building ‘CaseStudy-SingleCellSimulation.Rmd’ using rmarkdown Quitting from lines at lines 97-102 [run-sim-buildbench] (CaseStudy-SingleCellSimulation.Rmd) Error: processing vignette 'CaseStudy-SingleCellSimulation.Rmd' failed with diagnostics: No method returned valid values for any assays! --- failed re-building ‘CaseStudy-SingleCellSimulation.Rmd’ --- re-building ‘Feature-ErrorHandling.Rmd’ using rmarkdown --- finished re-building ‘Feature-ErrorHandling.Rmd’ --- re-building ‘Feature-Iterative.Rmd’ using rmarkdown --- finished re-building ‘Feature-Iterative.Rmd’ --- re-building ‘Feature-Parallel.Rmd’ using rmarkdown --- finished re-building ‘Feature-Parallel.Rmd’ --- re-building ‘SummarizedBenchmark-ClassDetails.Rmd’ using rmarkdown --- finished re-building ‘SummarizedBenchmark-ClassDetails.Rmd’ --- re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’ using rmarkdown --- finished re-building ‘SummarizedBenchmark-FullCaseStudy.Rmd’ --- re-building ‘SummarizedBenchmark-Introduction.Rmd’ using rmarkdown --- finished re-building ‘SummarizedBenchmark-Introduction.Rmd’ SUMMARY: processing the following file failed: ‘CaseStudy-SingleCellSimulation.Rmd’ Error: Vignette re-building failed. Execution halted