Felix G.M. Ernst
| Snapshot Date: 2024-03-27 14:00:18 -0400 (Wed, 27 Mar 2024) |
| git_url: https://git.bioconductor.org/packages/Structstrings |
| git_branch: devel |
| git_last_commit: 351ac7c |
| git_last_commit_date: 2024-03-26 17:23:32 -0400 (Tue, 26 Mar 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-03-28 11:41:24 -0400 (Thu, 28 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" | 4708 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" | 4446 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" | 4471 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" | 4426 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2066/2270 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Structstrings 1.19.1 (landing page) Felix G.M. Ernst
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the Structstrings package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Structstrings.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: Structstrings |
| Version: 1.19.1 |
| Command: /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD INSTALL Structstrings |
| StartedAt: 2024-03-27 19:33:23 -0000 (Wed, 27 Mar 2024) |
| EndedAt: 2024-03-27 19:33:48 -0000 (Wed, 27 Mar 2024) |
| EllapsedTime: 24.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD INSTALL Structstrings
###
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* installing to library ‘/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library’
* installing *source* package ‘Structstrings’ ...
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 10.3.1’
gcc -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -c DotBracketDataFrame_class.c -o DotBracketDataFrame_class.o
DotBracketDataFrame_class.c: In function ‘get_base_pairing_per_char_pair’:
DotBracketDataFrame_class.c:40:29: warning: format ‘%s’ expects argument of type ‘char *’, but argument 2 has type ‘int’ [-Wformat=]
40 | error("unbalanced '%s%s' brackets in dot bracket structure", bracket_open, bracket_close);
| ~^ ~~~~~~~~~~~~
| | |
| char * int
| %d
DotBracketDataFrame_class.c:40:31: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘int’ [-Wformat=]
40 | error("unbalanced '%s%s' brackets in dot bracket structure", bracket_open, bracket_close);
| ~^ ~~~~~~~~~~~~~
| | |
| char * int
| %d
DotBracketDataFrame_class.c:52:25: warning: format ‘%s’ expects argument of type ‘char *’, but argument 2 has type ‘int’ [-Wformat=]
52 | error("unbalanced '%s%s' brackets in dot bracket structure", bracket_open, bracket_close);
| ~^ ~~~~~~~~~~~~
| | |
| char * int
| %d
DotBracketDataFrame_class.c:52:27: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘int’ [-Wformat=]
52 | error("unbalanced '%s%s' brackets in dot bracket structure", bracket_open, bracket_close);
| ~^ ~~~~~~~~~~~~~
| | |
| char * int
| %d
gcc -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -c R_init_Structstrings.c -o R_init_Structstrings.o
gcc -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"/home/biocbuild/R/R-4.4-devel-2024.03.20/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/S4Vectors/include' -I/usr/local/include -fPIC -g -O2 -Wall -c utils.c -o utils.o
gcc -shared -L/home/biocbuild/R/R-4.4-devel-2024.03.20/lib -L/usr/local/lib -o Structstrings.so DotBracketDataFrame_class.o IRanges_stubs.o R_init_Structstrings.o S4Vectors_stubs.o utils.o -L/home/biocbuild/R/R-4.4-devel-2024.03.20/lib -lR
installing to /home/biocbuild/R/R-4.4-devel-2024.03.20/site-library/00LOCK-Structstrings/00new/Structstrings/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Structstrings)