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This page was generated on 2023-03-29 11:06:39 -0400 (Wed, 29 Mar 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" 4547
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" 4308
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences" 4301
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for SomaticSignatures on merida1


To the developers/maintainers of the SomaticSignatures package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SomaticSignatures.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1931/2195HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SomaticSignatures 2.35.0  (landing page)
Julian Gehring
Snapshot Date: 2023-03-28 14:00:22 -0400 (Tue, 28 Mar 2023)
git_url: https://git.bioconductor.org/packages/SomaticSignatures
git_branch: devel
git_last_commit: 4de401f
git_last_commit_date: 2022-11-01 11:09:11 -0400 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: SomaticSignatures
Version: 2.35.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SomaticSignatures
StartedAt: 2023-03-28 20:37:40 -0400 (Tue, 28 Mar 2023)
EndedAt: 2023-03-28 20:44:09 -0400 (Tue, 28 Mar 2023)
EllapsedTime: 389.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SomaticSignatures
###
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* checking for file ‘SomaticSignatures/DESCRIPTION’ ... OK
* preparing ‘SomaticSignatures’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SomaticSignatures-vignette.Rhtml’ using knitr
Quitting from lines 737-738 (SomaticSignatures-vignette.Rhtml) 
Error: processing vignette 'SomaticSignatures-vignette.Rhtml' failed with diagnostics:
package 'genefilter' could not be loaded
--- failed re-building ‘SomaticSignatures-vignette.Rhtml’

SUMMARY: processing the following file failed:
  ‘SomaticSignatures-vignette.Rhtml’

Error: Vignette re-building failed.
Execution halted