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This page was generated on 2024-03-04 11:39:53 -0500 (Mon, 04 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4676
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" 4414
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4441
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" 4417
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1840/2251HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SCArray 1.11.0  (landing page)
Xiuwen Zheng
Snapshot Date: 2024-03-01 14:00:22 -0500 (Fri, 01 Mar 2024)
git_url: https://git.bioconductor.org/packages/SCArray
git_branch: devel
git_last_commit: 618e9de
git_last_commit_date: 2023-10-24 11:29:01 -0500 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    WARNINGS  

INSTALL results for SCArray on merida1


To the developers/maintainers of the SCArray package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SCArray.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SCArray
Version: 1.11.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SCArray
StartedAt: 2024-03-01 16:35:10 -0500 (Fri, 01 Mar 2024)
EndedAt: 2024-03-01 16:36:50 -0500 (Fri, 01 Mar 2024)
EllapsedTime: 100.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SCArray
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘SCArray’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sc_main.cpp -o sc_main.o
sc_main.cpp:38:33: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
        if (!Rf_isMatrix(ii)) Rf_error(err_type);
                                       ^~~~~~~~
sc_main.cpp:38:33: note: treat the string as an argument to avoid this
        if (!Rf_isMatrix(ii)) Rf_error(err_type);
                                       ^
                                       "%s", 
sc_main.cpp:44:12: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
                Rf_error(err_type);
                         ^~~~~~~~
sc_main.cpp:44:12: note: treat the string as an argument to avoid this
                Rf_error(err_type);
                         ^
                         "%s", 
sc_main.cpp:46:12: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
                Rf_error(err_type);
                         ^~~~~~~~
sc_main.cpp:46:12: note: treat the string as an argument to avoid this
                Rf_error(err_type);
                         ^
                         "%s", 
sc_main.cpp:80:53: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
                if (Rf_isNull(dm) || Rf_length(dm) != 2) Rf_error(err);
                                                                  ^~~
sc_main.cpp:80:53: note: treat the string as an argument to avoid this
                if (Rf_isNull(dm) || Rf_length(dm) != 2) Rf_error(err);
                                                                  ^
                                                                  "%s", 
sc_main.cpp:116:48: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
                if (Rf_xlength(a) != Rf_xlength(b)) Rf_error(err_len);
                                                             ^~~~~~~
sc_main.cpp:116:48: note: treat the string as an argument to avoid this
                if (Rf_xlength(a) != Rf_xlength(b)) Rf_error(err_len);
                                                             ^
                                                             "%s", 
sc_main.cpp:121:48: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
                if (Rf_xlength(a) != Rf_xlength(b)) Rf_error(err_len);
                                                             ^~~~~~~
sc_main.cpp:121:48: note: treat the string as an argument to avoid this
                if (Rf_xlength(a) != Rf_xlength(b)) Rf_error(err_len);
                                                             ^
                                                             "%s", 
6 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sc_minmax.cpp -o sc_minmax.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sc_misc.cpp -o sc_misc.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o SCArray.so sc_main.o sc_minmax.o sc_misc.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/00LOCK-SCArray/00new/SCArray/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SCArray)