Mike Smith
| Snapshot Date: 2024-05-01 14:05:06 -0400 (Wed, 01 May 2024) |
| git_url: https://git.bioconductor.org/packages/Rarr |
| git_branch: devel |
| git_last_commit: cc17907 |
| git_last_commit_date: 2024-04-30 11:48:31 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-05-03 11:38:44 -0400 (Fri, 03 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4660 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4391 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4422 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1624/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Rarr 1.5.0 (landing page) Mike Smith
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the Rarr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rarr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Rarr |
| Version: 1.5.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rarr.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rarr_1.5.0.tar.gz |
| StartedAt: 2024-05-02 09:50:54 -0400 (Thu, 02 May 2024) |
| EndedAt: 2024-05-02 09:52:28 -0400 (Thu, 02 May 2024) |
| EllapsedTime: 93.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Rarr.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rarr.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rarr_1.5.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/Rarr.Rcheck’
* using R version 4.4.0 Patched (2024-04-24 r86482)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.4
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Rarr/DESCRIPTION’ ... OK
* this is package ‘Rarr’ version ‘1.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
inst/extdata/zarr_examples/column-first/Unicode.zarr/.zarray
inst/extdata/zarr_examples/column-first/boolean.zarr/.zarray
inst/extdata/zarr_examples/column-first/float16.zarr/.zarray
inst/extdata/zarr_examples/column-first/float32.zarr/.zarray
inst/extdata/zarr_examples/column-first/float64.zarr/.zarray
inst/extdata/zarr_examples/column-first/int16.zarr/.zarray
inst/extdata/zarr_examples/column-first/int32.zarr/.zarray
inst/extdata/zarr_examples/column-first/int64.zarr/.zarray
inst/extdata/zarr_examples/column-first/int8.zarr/.zarray
inst/extdata/zarr_examples/column-first/string.zarr/.zarray
inst/extdata/zarr_examples/column-first/uint16.zarr/.zarray
inst/extdata/zarr_examples/column-first/uint32.zarr/.zarray
inst/extdata/zarr_examples/column-first/uint64.zarr/.zarray
inst/extdata/zarr_examples/column-first/uint8.zarr/.zarray
inst/extdata/zarr_examples/column-first/vlenUTF8.zarr/.zarray
inst/extdata/zarr_examples/compression/bzip2.zarr/.zarray
inst/extdata/zarr_examples/compression/lz4.zarr/.zarray
inst/extdata/zarr_examples/compression/lzma.zarr/.zarray
inst/extdata/zarr_examples/compression/zlib.zarr/.zarray
inst/extdata/zarr_examples/compression/zstd.zarr/.zarray
inst/extdata/zarr_examples/fill-values/double-inf.zarr/.zarray
inst/extdata/zarr_examples/fill-values/double-neginf.zarr/.zarray
inst/extdata/zarr_examples/row-first/float16.zarr/.zarray
inst/extdata/zarr_examples/row-first/float32.zarr/.zarray
inst/extdata/zarr_examples/row-first/float64.zarr/.zarray
inst/extdata/zarr_examples/row-first/int16.zarr/.zarray
inst/extdata/zarr_examples/row-first/int32.zarr/.zarray
inst/extdata/zarr_examples/row-first/int64.zarr/.zarray
inst/extdata/zarr_examples/row-first/int8.zarr/.zarray
inst/extdata/zarr_examples/row-first/string.zarr/.zarray
inst/extdata/zarr_examples/row-first/uint32.zarr/.zarray
inst/extdata/zarr_examples/row-first/uint64.zarr/.zarray
inst/extdata/zarr_examples/row-first/uint8.zarr/.zarray
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rarr’ can be installed ... OK
* used C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
File ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rarr/libs/Rarr.so’:
Found ‘___assert_rtn’, possibly from ‘assert’ (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
zarr_overview 0.257 0.044 7.997
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘tinytest.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs
See
‘/Users/biocbuild/bbs-3.20-bioc/meat/Rarr.Rcheck/00check.log’
for details.
Rarr.Rcheck/00install.out
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rarr
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘Rarr’ ...
** using staged installation
NO_RLIB=
R_CPPFLAGS=-I/Library/Frameworks/R.framework/Resources/include
configure: is Bioc build machine
configure: configuring the Zstd filter...
configure: compiling bundled Zstd library
configure: configuring the BLOSC filter...
configure: compiling bundled BLOSC library
checking whether C compiler accepts -msse2... no
configure: Bioc build machine; disabling MAVX2
checking for gcc __builtin_cpu_init function... (cached) true
checking for x86 sse2 instruction support... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/compression_tools/blosc/lib/blosc-1.20.1/Makefile
config.status: creating src/compression_tools/blosc/Makefile
config.status: creating src/compression_tools/blosc/lib/snappy-1.1.1/Makefile
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c Rarr.c -o Rarr.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c bit64_conversion.c -o bit64_conversion.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c compress.c -o compress.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c decompress.c -o decompress.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c float16_conversion.c -o float16_conversion.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c type_conversion.c -o type_conversion.o
make -C compression_tools/zstd
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/debug.c -o common/debug.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/entropy_common.c -o common/entropy_common.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/error_private.c -o common/error_private.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/fse_decompress.c -o common/fse_decompress.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/pool.c -o common/pool.o -o common/pool.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/threading.c -o common/threading.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/xxhash.c -o common/xxhash.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/zstd_common.c -o common/zstd_common.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/fse_compress.c -o compress/fse_compress.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/hist.c -o compress/hist.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/huf_compress.c -o compress/huf_compress.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress.c -o compress/zstd_compress.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_literals.c -o compress/zstd_compress_literals.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_sequences.c -o compress/zstd_compress_sequences.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_superblock.c -o compress/zstd_compress_superblock.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_double_fast.c -o compress/zstd_double_fast.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_fast.c -o compress/zstd_fast.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_lazy.c -o compress/zstd_lazy.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_ldm.c -o compress/zstd_ldm.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_opt.c -o compress/zstd_opt.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstdmt_compress.c -o compress/zstdmt_compress.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/huf_decompress.c -o decompress/huf_decompress.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_ddict.c -o decompress/zstd_ddict.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_decompress.c -o decompress/zstd_decompress.o
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_decompress_block.c -o decompress/zstd_decompress_block.o
rm -f libzstd.a
ar cq libzstd.a common/debug.o common/entropy_common.o common/error_private.o common/fse_decompress.o common/pool.o common/threading.o common/xxhash.o common/zstd_common.o compress/fse_compress.o compress/hist.o compress/huf_compress.o compress/zstd_compress.o compress/zstd_compress_literals.o compress/zstd_compress_sequences.o compress/zstd_compress_superblock.o compress/zstd_double_fast.o compress/zstd_fast.o compress/zstd_lazy.o compress/zstd_ldm.o compress/zstd_opt.o compress/zstdmt_compress.o decompress/huf_decompress.o decompress/zstd_ddict.o decompress/zstd_decompress.o decompress/zstd_decompress_block.o
ranlib libzstd.a
make -C compression_tools/blosc
make -C lib/snappy-1.1.1
clang++ -arch x86_64 -std=gnu++17 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -DUSING_R -c snappy.cc
snappy.cc:578:13: warning: unused function 'ComputeTable' [-Wunused-function]
static void ComputeTable() {
^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -DUSING_R -c snappy-c.cc
clang++ -arch x86_64 -std=gnu++17 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -DUSING_R -c snappy-sinksource.cc
clang++ -arch x86_64 -std=gnu++17 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -DUSING_R -c snappy-stubs-internal.cc
make -C lib/lz4-1.9.2
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -DNLZ4_DEBUG -c lz4.c
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -DNLZ4_DEBUG -c lz4hc.c
make -C lib/blosc-1.20.1 all
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -DUSING_R -c bitshuffle-generic.c
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -DUSING_R -c shuffle-generic.c
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -DUSING_R -c shuffle.c
shuffle.c:316:22: warning: unused variable 'cpu_features' [-Wunused-variable]
blosc_cpu_features cpu_features = blosc_get_cpu_features();
^
In file included from shuffle.c:12:
./shuffle-generic.h:32:13: warning: unused function 'shuffle_generic_inline' [-Wunused-function]
static void shuffle_generic_inline(const size_t type_size,
^
./shuffle-generic.h:61:13: warning: unused function 'unshuffle_generic_inline' [-Wunused-function]
static void unshuffle_generic_inline(const size_t type_size,
^
3 warnings generated.
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -DUSING_R -c blosclz.c
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -DUSING_R -c blosc.c
blosc.c:742:11: warning: variable 'ctbytes' set but not used [-Wunused-but-set-variable]
int32_t ctbytes = 0; /* number of compressed bytes in block */
^
blosc.c:303:12: warning: unused function 'compname_to_clibcode' [-Wunused-function]
static int compname_to_clibcode(const char *compname)
^
2 warnings generated.
clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -fPIC -I/opt/R/x86_64/include -I/Library/Frameworks/R.framework/Resources/include -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -DUSING_R -c fastcopy.c
rm -f libblosc.a
ar cq libblosc.a lib/blosc-1.20.1/blosc.o lib/blosc-1.20.1/bitshuffle-generic.o lib/blosc-1.20.1/blosclz.o lib/blosc-1.20.1/shuffle.o lib/blosc-1.20.1/fastcopy.o lib/blosc-1.20.1/shuffle-generic.o lib/snappy-1.1.1/snappy.o lib/snappy-1.1.1/snappy-c.o lib/snappy-1.1.1/snappy-sinksource.o lib/snappy-1.1.1/snappy-stubs-internal.o lib/lz4-1.9.2/lz4.o lib/lz4-1.9.2/lz4hc.o
ranlib libblosc.a
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o Rarr.so Rarr.o bit64_conversion.o compress.o decompress.o float16_conversion.o type_conversion.o ./compression_tools/blosc/libblosc.a ./compression_tools/zstd/libzstd.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/00LOCK-Rarr/00new/Rarr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rarr)
Rarr.Rcheck/tests/tinytest.Rout
R version 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup"
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Platform: x86_64-apple-darwin20
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> if (requireNamespace("tinytest", quietly = TRUE)) {
+ tinytest::test_package("Rarr")
+ }
test_argument_handling.R...... 1 tests [0;32mOK[0m [0;34m0.1s[0m
test_boolean.R................ 0 tests
test_boolean.R................ 0 tests
test_boolean.R................ 1 tests [0;32mOK[0m
test_boolean.R................ 2 tests [0;32mOK[0m
test_boolean.R................ 3 tests [0;32mOK[0m
test_boolean.R................ 4 tests [0;32mOK[0m
test_boolean.R................ 5 tests [0;32mOK[0m [0;36m29ms[0m
test_datatypes.R.............. 1 tests [0;32mOK[0m
test_datatypes.R.............. 2 tests [0;32mOK[0m
test_datatypes.R.............. 3 tests [0;32mOK[0m
test_datatypes.R.............. 4 tests [0;32mOK[0m
test_datatypes.R.............. 5 tests [0;32mOK[0m
test_datatypes.R.............. 6 tests [0;32mOK[0m
test_datatypes.R.............. 7 tests [0;32mOK[0m
test_datatypes.R.............. 8 tests [0;32mOK[0m
test_datatypes.R.............. 9 tests [0;32mOK[0m
test_datatypes.R.............. 10 tests [0;32mOK[0m
test_datatypes.R.............. 11 tests [0;32mOK[0m
test_datatypes.R.............. 12 tests [0;32mOK[0m
test_datatypes.R.............. 13 tests [0;32mOK[0m
test_datatypes.R.............. 14 tests [0;32mOK[0m
test_datatypes.R.............. 15 tests [0;32mOK[0m
test_datatypes.R.............. 16 tests [0;32mOK[0m [0;36m22ms[0m
test_decompression.R.......... 0 tests
test_decompression.R.......... 15 tests [0;32mOK[0m [0;36m74ms[0m
test_fill_values.R............ 0 tests
test_fill_values.R............ 0 tests
test_fill_values.R............ 10 tests [0;32mOK[0m [0;36m32ms[0m
test_float16.R................ 0 tests
test_float16.R................ 0 tests
test_float16.R................ 0 tests
test_float16.R................ 1 tests [0;32mOK[0m
test_float16.R................ 2 tests [0;32mOK[0m
test_float16.R................ 3 tests [0;32mOK[0m
test_float16.R................ 4 tests [0;32mOK[0m
test_float16.R................ 5 tests [0;32mOK[0m
test_float16.R................ 6 tests [0;32mOK[0m
test_float16.R................ 7 tests [0;32mOK[0m
test_float16.R................ 8 tests [0;32mOK[0m
test_float16.R................ 9 tests [0;32mOK[0m [0;36m38ms[0m
test_float32.R................ 0 tests
test_float32.R................ 0 tests
test_float32.R................ 0 tests
test_float32.R................ 1 tests [0;32mOK[0m
test_float32.R................ 2 tests [0;32mOK[0m
test_float32.R................ 3 tests [0;32mOK[0m
test_float32.R................ 4 tests [0;32mOK[0m
test_float32.R................ 5 tests [0;32mOK[0m
test_float32.R................ 6 tests [0;32mOK[0m
test_float32.R................ 7 tests [0;32mOK[0m [0;36m60ms[0m
test_float64.R................ 0 tests
test_float64.R................ 0 tests
test_float64.R................ 0 tests
test_float64.R................ 1 tests [0;32mOK[0m
test_float64.R................ 2 tests [0;32mOK[0m
test_float64.R................ 3 tests [0;32mOK[0m
test_float64.R................ 4 tests [0;32mOK[0m
test_float64.R................ 5 tests [0;32mOK[0m
test_float64.R................ 6 tests [0;32mOK[0m
test_float64.R................ 7 tests [0;32mOK[0m [0;36m34ms[0m
test_int16.R.................. 0 tests
test_int16.R.................. 0 tests
test_int16.R.................. 0 tests
test_int16.R.................. 1 tests [0;32mOK[0m
test_int16.R.................. 2 tests [0;32mOK[0m
test_int16.R.................. 3 tests [0;32mOK[0m
test_int16.R.................. 4 tests [0;32mOK[0m
test_int16.R.................. 5 tests [0;32mOK[0m
test_int16.R.................. 6 tests [0;32mOK[0m
test_int16.R.................. 7 tests [0;32mOK[0m [0;36m31ms[0m
test_int32.R.................. 0 tests
test_int32.R.................. 0 tests
test_int32.R.................. 0 tests
test_int32.R.................. 1 tests [0;32mOK[0m
test_int32.R.................. 2 tests [0;32mOK[0m
test_int32.R.................. 3 tests [0;32mOK[0m
test_int32.R.................. 4 tests [0;32mOK[0m
test_int32.R.................. 5 tests [0;32mOK[0m
test_int32.R.................. 6 tests [0;32mOK[0m
test_int32.R.................. 7 tests [0;32mOK[0m [0;36m33ms[0m
test_int64.R.................. 0 tests
test_int64.R.................. 0 tests
test_int64.R.................. 0 tests
test_int64.R.................. 1 tests [0;32mOK[0m
test_int64.R.................. 2 tests [0;32mOK[0m
test_int64.R.................. 3 tests [0;32mOK[0m
test_int64.R.................. 4 tests [0;32mOK[0m
test_int64.R.................. 5 tests [0;32mOK[0m
test_int64.R.................. 6 tests [0;32mOK[0m
test_int64.R.................. 7 tests [0;32mOK[0m
test_int64.R.................. 8 tests [0;32mOK[0m
test_int64.R.................. 9 tests [0;32mOK[0m
test_int64.R.................. 10 tests [0;32mOK[0m
test_int64.R.................. 11 tests [0;32mOK[0m
test_int64.R.................. 12 tests [0;32mOK[0m
test_int64.R.................. 13 tests [0;32mOK[0m
test_int64.R.................. 14 tests [0;32mOK[0m
test_int64.R.................. 15 tests [0;32mOK[0m [0;36m80ms[0m
test_int8.R................... 0 tests
test_int8.R................... 0 tests
test_int8.R................... 0 tests
test_int8.R................... 1 tests [0;32mOK[0m
test_int8.R................... 2 tests [0;32mOK[0m
test_int8.R................... 3 tests [0;32mOK[0m
test_int8.R................... 4 tests [0;32mOK[0m
test_int8.R................... 5 tests [0;32mOK[0m
test_int8.R................... 6 tests [0;32mOK[0m
test_int8.R................... 7 tests [0;32mOK[0m [0;36m44ms[0m
test_normalize_path.R......... 0 tests
test_normalize_path.R......... 0 tests
test_normalize_path.R......... 5 tests [0;32mOK[0m [0;36m9ms[0m
test_read_metadata.R.......... 0 tests
test_read_metadata.R.......... 0 tests
test_read_metadata.R.......... 1 tests [0;32mOK[0m
test_read_metadata.R.......... 2 tests [0;32mOK[0m
test_read_metadata.R.......... 3 tests [0;32mOK[0m [0;36m20ms[0m
test_roundtrip.R.............. 0 tests
test_roundtrip.R.............. 1 tests [0;32mOK[0m
test_roundtrip.R.............. 2 tests [0;32mOK[0m
test_roundtrip.R.............. 3 tests [0;32mOK[0m
test_roundtrip.R.............. 3 tests [0;32mOK[0m
test_roundtrip.R.............. 3 tests [0;32mOK[0m
test_roundtrip.R.............. 4 tests [0;32mOK[0m
test_roundtrip.R.............. 5 tests [0;32mOK[0m
test_roundtrip.R.............. 5 tests [0;32mOK[0m
test_roundtrip.R.............. 6 tests [0;32mOK[0m
test_roundtrip.R.............. 7 tests [0;32mOK[0m
test_roundtrip.R.............. 7 tests [0;32mOK[0m
test_roundtrip.R.............. 8 tests [0;32mOK[0m
test_roundtrip.R.............. 9 tests [0;32mOK[0m
test_roundtrip.R.............. 9 tests [0;32mOK[0m
test_roundtrip.R.............. 10 tests [0;32mOK[0m
test_roundtrip.R.............. 11 tests [0;32mOK[0m
test_roundtrip.R.............. 11 tests [0;32mOK[0m
test_roundtrip.R.............. 12 tests [0;32mOK[0m
test_roundtrip.R.............. 13 tests [0;32mOK[0m
test_roundtrip.R.............. 13 tests [0;32mOK[0m
test_roundtrip.R.............. 14 tests [0;32mOK[0m
test_roundtrip.R.............. 15 tests [0;32mOK[0m
test_roundtrip.R.............. 15 tests [0;32mOK[0m
test_roundtrip.R.............. 16 tests [0;32mOK[0m
test_roundtrip.R.............. 17 tests [0;32mOK[0m
test_roundtrip.R.............. 17 tests [0;32mOK[0m
test_roundtrip.R.............. 18 tests [0;32mOK[0m
test_roundtrip.R.............. 19 tests [0;32mOK[0m
test_roundtrip.R.............. 19 tests [0;32mOK[0m
test_roundtrip.R.............. 20 tests [0;32mOK[0m
test_roundtrip.R.............. 21 tests [0;32mOK[0m
test_roundtrip.R.............. 21 tests [0;32mOK[0m
test_roundtrip.R.............. 22 tests [0;32mOK[0m
test_roundtrip.R.............. 23 tests [0;32mOK[0m [0;34m6.9s[0m
test_s3.R..................... 0 tests
test_s3.R..................... 0 tests Loading required package: mockery
test_s3.R..................... 1 tests [0;32mOK[0m [0;34m0.2s[0m
test_string.R................. 0 tests
test_string.R................. 0 tests
test_string.R................. 0 tests
test_string.R................. 1 tests [0;32mOK[0m
test_string.R................. 2 tests [0;32mOK[0m
test_string.R................. 3 tests [0;32mOK[0m
test_string.R................. 4 tests [0;32mOK[0m
test_string.R................. 5 tests [0;32mOK[0m
test_string.R................. 6 tests [0;32mOK[0m
test_string.R................. 7 tests [0;32mOK[0m
test_string.R................. 7 tests [0;32mOK[0m
test_string.R................. 8 tests [0;32mOK[0m
test_string.R................. 9 tests [0;32mOK[0m
test_string.R................. 9 tests [0;32mOK[0m
test_string.R................. 10 tests [0;32mOK[0m
test_string.R................. 11 tests [0;32mOK[0m
test_string.R................. 11 tests [0;32mOK[0m
test_string.R................. 11 tests [0;32mOK[0m
test_string.R................. 12 tests [0;32mOK[0m
test_string.R................. 13 tests [0;32mOK[0m
test_string.R................. 14 tests [0;32mOK[0m
test_string.R................. 14 tests [0;32mOK[0m
test_string.R................. 15 tests [0;32mOK[0m
test_string.R................. 16 tests [0;32mOK[0m
test_string.R................. 17 tests [0;32mOK[0m
test_string.R................. 17 tests [0;32mOK[0m
test_string.R................. 17 tests [0;32mOK[0m
test_string.R................. 17 tests [0;32mOK[0m
test_string.R................. 17 tests [0;32mOK[0m
test_string.R................. 17 tests [0;32mOK[0m
test_string.R................. 17 tests [0;32mOK[0m
test_string.R................. 18 tests [0;32mOK[0m [0;34m1.0s[0m
test_uint16.R................. 0 tests
test_uint16.R................. 0 tests
test_uint16.R................. 1 tests [0;32mOK[0m
test_uint16.R................. 2 tests [0;32mOK[0m
test_uint16.R................. 3 tests [0;32mOK[0m
test_uint16.R................. 4 tests [0;32mOK[0m
test_uint16.R................. 5 tests [0;32mOK[0m [0;36m29ms[0m
test_uint32.R................. 0 tests
test_uint32.R................. 0 tests
test_uint32.R................. 0 tests
test_uint32.R................. 1 tests [0;32mOK[0m
test_uint32.R................. 2 tests [0;32mOK[0m
test_uint32.R................. 3 tests [0;32mOK[0m
test_uint32.R................. 4 tests [0;32mOK[0m
test_uint32.R................. 5 tests [0;32mOK[0m
test_uint32.R................. 6 tests [0;32mOK[0m
test_uint32.R................. 7 tests [0;32mOK[0m
test_uint32.R................. 8 tests [0;32mOK[0m
test_uint32.R................. 9 tests [0;32mOK[0m
test_uint32.R................. 10 tests [0;32mOK[0m
test_uint32.R................. 11 tests [0;32mOK[0m [0;36m50ms[0m
test_uint64.R................. 0 tests
test_uint64.R................. 0 tests
test_uint64.R................. 1 tests [0;32mOK[0m
test_uint64.R................. 2 tests [0;32mOK[0m
test_uint64.R................. 3 tests [0;32mOK[0m
test_uint64.R................. 4 tests [0;32mOK[0m
test_uint64.R................. 5 tests [0;32mOK[0m
test_uint64.R................. 6 tests [0;32mOK[0m
test_uint64.R................. 7 tests [0;32mOK[0m [0;36m37ms[0m
test_uint8.R.................. 0 tests
test_uint8.R.................. 0 tests
test_uint8.R.................. 1 tests [0;32mOK[0m
test_uint8.R.................. 2 tests [0;32mOK[0m
test_uint8.R.................. 3 tests [0;32mOK[0m
test_uint8.R.................. 4 tests [0;32mOK[0m
test_uint8.R.................. 5 tests [0;32mOK[0m [0;36m23ms[0m
test_update_zarr.R............ 0 tests
test_update_zarr.R............ 0 tests
test_update_zarr.R............ 0 tests
test_update_zarr.R............ 1 tests [0;32mOK[0m
test_update_zarr.R............ 2 tests [0;32mOK[0m
test_update_zarr.R............ 3 tests [0;32mOK[0m
test_update_zarr.R............ 3 tests [0;32mOK[0m
test_update_zarr.R............ 4 tests [0;32mOK[0m
test_update_zarr.R............ 5 tests [0;32mOK[0m
test_update_zarr.R............ 6 tests [0;32mOK[0m [0;36m47ms[0m
test_url_parsing.R............ 0 tests
test_url_parsing.R............ 10 tests [0;32mOK[0m
test_url_parsing.R............ 15 tests [0;32mOK[0m
test_url_parsing.R............ 16 tests [0;32mOK[0m
test_url_parsing.R............ 17 tests [0;32mOK[0m
test_url_parsing.R............ 18 tests [0;32mOK[0m [0;36m18ms[0m
test_utils.R.................. 1 tests [0;32mOK[0m
test_utils.R.................. 2 tests [0;32mOK[0m
test_utils.R.................. 3 tests [0;32mOK[0m [0;36m6ms[0m
All ok, 211 results (9.0s)
>
> proc.time()
user system elapsed
5.978 2.472 10.954
Rarr.Rcheck/Rarr-Ex.timings
| name | user | system | elapsed | |
| compressors | 0.460 | 0.153 | 0.739 | |
| create_empty_zarr_array | 0.005 | 0.002 | 0.068 | |
| read_zarr_array | 0.043 | 0.091 | 0.153 | |
| update_zarr_array | 0.014 | 0.005 | 0.024 | |
| write_zarr_array | 0.011 | 0.006 | 0.023 | |
| zarr_overview | 0.257 | 0.044 | 7.997 | |