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This page was generated on 2024-05-03 11:38:38 -0400 (Fri, 03 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4660
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4391
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4422
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1432/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OpenStats 1.17.0  (landing page)
Marina Kan
Snapshot Date: 2024-05-01 14:05:06 -0400 (Wed, 01 May 2024)
git_url: https://git.bioconductor.org/packages/OpenStats
git_branch: devel
git_last_commit: 9a7a5dd
git_last_commit_date: 2024-04-30 11:23:17 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    OK    OK  YES
kjohnson1macOS 13.6.6 Ventura / arm64see weekly results here

CHECK results for OpenStats on merida1


To the developers/maintainers of the OpenStats package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OpenStats.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: OpenStats
Version: 1.17.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OpenStats_1.17.0.tar.gz
StartedAt: 2024-05-02 08:39:21 -0400 (Thu, 02 May 2024)
EndedAt: 2024-05-02 08:43:47 -0400 (Thu, 02 May 2024)
EllapsedTime: 266.3 seconds
RetCode: 0
Status:   OK  
CheckDir: OpenStats.Rcheck
Warnings: 0

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OpenStats_1.17.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/OpenStats.Rcheck’
* using R version 4.4.0 Patched (2024-04-24 r86482)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.4
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OpenStats/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OpenStats’ version ‘1.17.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OpenStats’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) OpenStatsAnalysis.Rd:108: Escaped LaTeX specials: \& \& \& \& \&
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
OpenStatsReport 4.432   0.53   6.474
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.20-bioc/meat/OpenStats.Rcheck/00check.log’
for details.


Installation output

OpenStats.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL OpenStats
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘OpenStats’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (OpenStats)

Tests output


Example timings

OpenStats.Rcheck/OpenStats-Ex.timings

nameusersystemelapsed
OpenStatsAnalysis4.1850.1494.889
OpenStatsBuilder0.0010.0010.002
OpenStatsComplementarySplit3.0540.0463.763
OpenStatsList2.3520.1683.166
OpenStatsReport4.4320.5306.474
plot.OpenStats1.2110.1491.985
plot.OpenStatsComplementarySplit3.3930.4124.990
plot.OpenStatsFE0.1630.0180.244
plot.OpenStatsMM1.2500.1461.777
plot.OpenStatsRR0.6160.0710.923
print.OpenStats1.0970.1291.739
print.OpenStatsComplementarySplit3.3650.4084.930
print.OpenStatsFE0.1600.0170.234
print.OpenStatsMM1.1930.1391.638
print.OpenStatsRR0.6340.0700.839
summary.OpenStats1.4350.1252.129
summary.OpenStatsComplementarySplit3.2670.4194.767
summary.OpenStatsFE0.1540.0170.179
summary.OpenStatsMM1.1340.1421.590
summary.OpenStatsRR0.6320.0700.939