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This page was generated on 2024-03-28 11:38:03 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4708
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" 4446
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4471
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" 4426
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1268/2270HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MIRit 0.99.13  (landing page)
Jacopo Ronchi
Snapshot Date: 2024-03-27 14:00:18 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/MIRit
git_branch: devel
git_last_commit: 3a2a2cd
git_last_commit_date: 2024-02-12 09:24:04 -0400 (Mon, 12 Feb 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    ERROR  
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

BUILD results for MIRit on palomino3


To the developers/maintainers of the MIRit package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MIRit.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: MIRit
Version: 0.99.13
Command: chmod a+r MIRit -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MIRit
StartedAt: 2024-03-27 20:30:28 -0400 (Wed, 27 Mar 2024)
EndedAt: 2024-03-27 20:35:21 -0400 (Wed, 27 Mar 2024)
EllapsedTime: 293.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r MIRit -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MIRit
###
##############################################################################
##############################################################################


* checking for file 'MIRit/DESCRIPTION' ... OK
* preparing 'MIRit':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'MIRit.Rmd' using rmarkdown

Quitting from lines 792-798 [snpEvidence] (MIRit.Rmd)
Error: processing vignette 'MIRit.Rmd' failed with diagnostics:
ℹ In index: 1.
Caused by error in `gc_request_all()`:
! Failed to get all pages of /studies/search/findByEfoTrait?efoTrait=response%20to%20antidepressant!
--- failed re-building 'MIRit.Rmd'

SUMMARY: processing the following file failed:
  'MIRit.Rmd'

Error: Vignette re-building failed.
Execution halted