Back to Multiple platform build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-02-04 11:06:13 -0500 (Sat, 04 Feb 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" | 4483 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2023-01-10 r83596 ucrt) -- "Unsuffered Consequences" | 4249 |
merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" | 4272 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the INSPEcT package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/INSPEcT.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 965/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
INSPEcT 1.29.0 (landing page) Stefano de Pretis
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | NA | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: INSPEcT |
Version: 1.29.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:INSPEcT.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings INSPEcT_1.29.0.tar.gz |
StartedAt: 2023-02-04 02:33:45 -0500 (Sat, 04 Feb 2023) |
EndedAt: 2023-02-04 03:08:29 -0500 (Sat, 04 Feb 2023) |
EllapsedTime: 2084.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: INSPEcT.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:INSPEcT.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings INSPEcT_1.29.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.17-bioc/meat/INSPEcT.Rcheck’ * using R Under development (unstable) (2023-01-10 r83596) * using platform: x86_64-apple-darwin17.0 (64-bit) * R was compiled by Apple clang version 12.0.0 (clang-1200.0.32.29) GNU Fortran (GCC) 8.2.0 * running under: macOS Mojave 10.14.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘INSPEcT/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘INSPEcT’ version ‘1.29.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘INSPEcT’ can be installed ... OK * checking installed package size ... NOTE installed size is 7.1Mb sub-directories of 1Mb or more: R 1.8Mb data 2.8Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE output_pars: no visible global function definition for ‘plot.new’ plotSingleRNADynamic: no visible global function definition for ‘lines’ Undefined global functions or variables: lines plot.new Consider adding importFrom("graphics", "lines", "plot.new") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed makeSimDataset 205.341 0.667 282.246 quantifyExpressionsFromBAMs 67.191 4.883 97.606 rocThresholds 71.592 0.264 95.226 makeSimModel 70.897 0.244 93.563 rocCurve 70.598 0.258 97.410 INSPEcT_diffsteady-class 66.800 0.475 95.348 compareSteady 60.637 0.203 85.836 plotMA 60.492 0.171 79.901 modelRates 39.820 0.115 52.387 newINSPEcT 39.462 0.108 52.126 quantifyExpressionsFromTrCounts 34.402 0.113 46.458 processingDelay 33.198 0.093 43.401 makeOscillatorySimModel 16.825 0.086 24.529 compareSteadyNoNascent 13.832 0.054 19.082 inspectFromPCR 8.562 0.039 11.799 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.17-bioc/meat/INSPEcT.Rcheck/00check.log’ for details.
INSPEcT.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL INSPEcT ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3/Resources/library’ * installing *source* package ‘INSPEcT’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (INSPEcT)
INSPEcT.Rcheck/INSPEcT-Ex.timings
name | user | system | elapsed | |
AIC-INSPEcT-method | 0.373 | 0.015 | 0.571 | |
Extract | 0.778 | 0.033 | 1.185 | |
INSPEcT_diffsteady-class | 66.800 | 0.475 | 95.348 | |
calculateRatePvals | 0.475 | 0.014 | 0.723 | |
chisqmodel | 0.375 | 0.015 | 0.547 | |
chisqtest | 0.370 | 0.013 | 0.534 | |
combine | 0.754 | 0.007 | 1.076 | |
compareSteady | 60.637 | 0.203 | 85.836 | |
compareSteadyNoNascent | 13.832 | 0.054 | 19.082 | |
convergence | 0.366 | 0.007 | 0.524 | |
geneClass | 0.472 | 0.007 | 0.677 | |
inHeatmap | 0.441 | 0.013 | 0.606 | |
inspectFromPCR | 8.562 | 0.039 | 11.799 | |
labeledSF | 0.374 | 0.015 | 0.542 | |
logLik | 0.373 | 0.014 | 0.547 | |
makeModelRates | 0.472 | 0.013 | 0.679 | |
makeOscillatorySimModel | 16.825 | 0.086 | 24.529 | |
makeSimDataset | 205.341 | 0.667 | 282.246 | |
makeSimModel | 70.897 | 0.244 | 93.563 | |
modelRates | 39.820 | 0.115 | 52.387 | |
modelRatesNF | 3.283 | 0.043 | 4.340 | |
modelSelection | 0.380 | 0.014 | 0.516 | |
modelingParams | 0.373 | 0.013 | 0.515 | |
nGenes | 0.373 | 0.012 | 0.508 | |
nTpts | 0.377 | 0.010 | 0.506 | |
newINSPEcT | 39.462 | 0.108 | 52.126 | |
plotGene | 0.444 | 0.005 | 0.608 | |
plotMA | 60.492 | 0.171 | 79.901 | |
processingDelay | 33.198 | 0.093 | 43.401 | |
quantifyExpressionsFromBAMs | 67.191 | 4.883 | 97.606 | |
quantifyExpressionsFromTrCounts | 34.402 | 0.113 | 46.458 | |
ratePvals | 0.372 | 0.004 | 0.508 | |
ratesFirstGuess | 0.368 | 0.005 | 0.523 | |
ratesFirstGuessVar | 0.366 | 0.005 | 0.499 | |
removeModel | 0.579 | 0.004 | 0.803 | |
rocCurve | 70.598 | 0.258 | 97.410 | |
rocThresholds | 71.592 | 0.264 | 95.226 | |
split | 0.564 | 0.004 | 0.701 | |
tpts | 0.370 | 0.003 | 0.456 | |
viewConfidenceIntervals | 0.375 | 0.005 | 0.465 | |
viewModelRates | 0.367 | 0.004 | 0.471 | |