Shian Su
| Snapshot Date: 2024-03-27 14:00:18 -0400 (Wed, 27 Mar 2024) |
| git_url: https://git.bioconductor.org/packages/Glimma |
| git_branch: devel |
| git_last_commit: 7636e1b |
| git_last_commit_date: 2023-10-24 10:49:23 -0400 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-03-28 11:40:47 -0400 (Thu, 28 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" | 4708 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" | 4446 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" | 4471 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" | 4426 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 867/2270 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Glimma 2.13.0 (landing page) Shian Su
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the Glimma package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Glimma.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: Glimma |
| Version: 2.13.0 |
| Command: /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD build --keep-empty-dirs --no-resave-data Glimma |
| StartedAt: 2024-03-27 22:51:02 -0000 (Wed, 27 Mar 2024) |
| EndedAt: 2024-03-27 22:53:12 -0000 (Wed, 27 Mar 2024) |
| EllapsedTime: 130.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.4-devel-2024.03.20/bin/R CMD build --keep-empty-dirs --no-resave-data Glimma ### ############################################################################## ############################################################################## * checking for file ‘Glimma/DESCRIPTION’ ... OK * preparing ‘Glimma’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘DESeq2.Rmd’ using rmarkdown --- finished re-building ‘DESeq2.Rmd’ --- re-building ‘limma_edger.Rmd’ using rmarkdown --- finished re-building ‘limma_edger.Rmd’ --- re-building ‘single_cell_edger.Rmd’ using rmarkdown Quitting from lines 42-49 [unnamed-chunk-2] (single_cell_edger.Rmd) Error: processing vignette 'single_cell_edger.Rmd' failed with diagnostics: failed to load resource name: AH73905 title: Ensembl 97 EnsDb for Mus musculus reason: database disk image is malformed --- failed re-building ‘single_cell_edger.Rmd’ SUMMARY: processing the following file failed: ‘single_cell_edger.Rmd’ Error: Vignette re-building failed. Execution halted