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This page was generated on 2023-12-06 11:39:24 -0500 (Wed, 06 Dec 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_64R Under development (unstable) (2023-11-11 r85510) -- "Unsuffered Consequences" 4609
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-11-14 r85524 ucrt) -- "Unsuffered Consequences" 4350
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2023-11-11 r85510) -- "Unsuffered Consequences" 4375
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2023-11-01 r85459) -- "Unsuffered Consequences" 4262
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 829/2229HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeomxTools 3.7.1  (landing page)
Maddy Griswold
Snapshot Date: 2023-12-05 14:00:18 -0500 (Tue, 05 Dec 2023)
git_url: https://git.bioconductor.org/packages/GeomxTools
git_branch: devel
git_last_commit: e62acc3
git_last_commit_date: 2023-10-25 16:57:08 -0500 (Wed, 25 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for GeomxTools on kunpeng2


To the developers/maintainers of the GeomxTools package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeomxTools.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: GeomxTools
Version: 3.7.1
Command: /home/biocbuild/R/R-4.4-devel-2023.11.02/bin/R CMD build --keep-empty-dirs --no-resave-data GeomxTools
StartedAt: 2023-12-05 23:00:34 -0000 (Tue, 05 Dec 2023)
EndedAt: 2023-12-05 23:07:09 -0000 (Tue, 05 Dec 2023)
EllapsedTime: 394.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-4.4-devel-2023.11.02/bin/R CMD build --keep-empty-dirs --no-resave-data GeomxTools
###
##############################################################################
##############################################################################


* checking for file ‘GeomxTools/DESCRIPTION’ ... OK
* preparing ‘GeomxTools’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Developer_Introduction_to_the_NanoStringGeoMxSet.Rmd’ using rmarkdown
--- finished re-building ‘Developer_Introduction_to_the_NanoStringGeoMxSet.Rmd’

--- re-building ‘GeomxSet_coercions.Rmd’ using rmarkdown

Quitting from lines 32-36 [Load Libraries] (GeomxSet_coercions.Rmd)
Error: processing vignette 'GeomxSet_coercions.Rmd' failed with diagnostics:
there is no package called 'Seurat'
--- failed re-building ‘GeomxSet_coercions.Rmd’

--- re-building ‘Protein_in_GeomxTools.Rmd’ using rmarkdown
--- finished re-building ‘Protein_in_GeomxTools.Rmd’

SUMMARY: processing the following file failed:
  ‘GeomxSet_coercions.Rmd’

Error: Vignette re-building failed.
Execution halted