Alexandre Kuhn
| Snapshot Date: 2024-05-08 14:05:06 -0400 (Wed, 08 May 2024) |
| git_url: https://git.bioconductor.org/packages/GEOsubmission |
| git_branch: devel |
| git_last_commit: 2e870ae |
| git_last_commit_date: 2024-04-30 10:21:55 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-05-10 11:37:07 -0400 (Fri, 10 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4662 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4393 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4424 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 822/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GEOsubmission 1.57.0 (landing page) Alexandre Kuhn
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the GEOsubmission package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GEOsubmission.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: GEOsubmission |
| Version: 1.57.0 |
| Command: chmod a+r GEOsubmission -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GEOsubmission |
| StartedAt: 2024-05-08 18:41:27 -0400 (Wed, 08 May 2024) |
| EndedAt: 2024-05-08 18:41:45 -0400 (Wed, 08 May 2024) |
| EllapsedTime: 18.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r GEOsubmission -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GEOsubmission ### ############################################################################## ############################################################################## * checking for file 'GEOsubmission/DESCRIPTION' ... OK * preparing 'GEOsubmission': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'GEOsubmission.Rnw' using Sweave Loading sampleinfo... Loading seriesinfo... Loading expression matrix in F:/biocbuild/bbs-3.20-bioc/tmpdir/RtmpWsc9ZW/Rinst189c4f031679/GEOsubmission/extdata/expressionNormalized.txt... Starting to write to F:/biocbuild/bbs-3.20-bioc/tmpdir/RtmpozJkmR/soft_example35b844372a70... Writing sampleinfo for 1 (sample1.CEL)... Writing expression data for sample1.CEL... Writing sampleinfo for 2 (sample2.CEL)... Writing expression data for sample2.CEL... Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 1033 Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "GEOsubmission.tex" ' had status 1033 Error: processing vignette 'GEOsubmission.Rnw' failed with diagnostics: Failed to locate 'texi2pdf' output file 'GEOsubmission.pdf' for vignette with name 'GEOsubmission' and engine 'utils::Sweave'. The following files exist in working directory 'F:\biocbuild\bbs-3.20-bioc\tmpdir\RtmpWsc9ZW\Rbuild189c1877ecc\GEOsubmission\vignettes': 'GEOsubmission.Rnw' (6607 bytes), 'GEOsubmission.bib' (411 bytes), 'GEOsubmission.tex' (21689 bytes) --- failed re-building 'GEOsubmission.Rnw' SUMMARY: processing the following file failed: 'GEOsubmission.Rnw' Error: Vignette re-building failed. Execution halted