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This page was generated on 2021-12-07 12:33:53 -0500 (Tue, 07 Dec 2021).

BUILD results for FRASER on merida1

To the developers/maintainers of the FRASER package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FRASER.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 676/2068HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FRASER 1.7.0  (landing page)
Christian Mertes
Snapshot Date: 2021-12-06 13:55:08 -0500 (Mon, 06 Dec 2021)
git_url: https://git.bioconductor.org/packages/FRASER
git_branch: master
git_last_commit: e6fb5aa
git_last_commit_date: 2021-10-26 12:59:14 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    ERROR  skipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: FRASER
Version: 1.7.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data FRASER
StartedAt: 2021-12-06 18:47:44 -0500 (Mon, 06 Dec 2021)
EndedAt: 2021-12-06 18:49:59 -0500 (Mon, 06 Dec 2021)
EllapsedTime: 135.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data FRASER
###
##############################################################################
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* checking for file ‘FRASER/DESCRIPTION’ ... OK
* preparing ‘FRASER’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘FRASER.Rnw’ using knitr
Mon Dec  6 18:49:55 2021: Start counting the split reads ...
Mon Dec  6 18:49:55 2021: Count split reads for sample: sample1
Mon Dec  6 18:49:56 2021: Count split reads for sample: sample2
Mon Dec  6 18:49:57 2021: Count split reads for sample: sample3
Mon Dec  6 18:49:58 2021 : count ranges need to be merged ...
Mon Dec  6 18:49:58 2021: Create splice site indices ...
Mon Dec  6 18:49:58 2021: Writing split counts to folder: /var/folders/bs/8v03p30536q2_ldj7yy088v40000gs/T//RtmpjOqi85/savedObjects/Data_Analysis/splitCounts
Error: processing vignette 'FRASER.Rnw' failed with diagnostics:
C stack usage  7970240 is too close to the limit
--- failed re-building ‘FRASER.Rnw’

SUMMARY: processing the following file failed:
  ‘FRASER.Rnw’

Error: Vignette re-building failed.
Execution halted