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This page was generated on 2024-04-29 11:40:38 -0400 (Mon, 29 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4752
palomino3Windows Server 2022 Datacenterx644.4.0 beta (2024-04-15 r86425 ucrt) -- "Puppy Cup" 4486
lconwaymacOS 12.7.1 Montereyx86_644.4.0 beta (2024-04-14 r86421) -- "Puppy Cup" 4518
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4475
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 330/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Chicago 1.31.0  (landing page)
Mikhail Spivakov
Snapshot Date: 2024-04-28 14:00:16 -0400 (Sun, 28 Apr 2024)
git_url: https://git.bioconductor.org/packages/Chicago
git_branch: devel
git_last_commit: 5d48074
git_last_commit_date: 2023-10-24 10:46:24 -0400 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped
kjohnson3macOS 13.6.5 Ventura / arm64see weekly results here

BUILD results for Chicago on kunpeng2


To the developers/maintainers of the Chicago package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Chicago.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: Chicago
Version: 1.31.0
Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data Chicago
StartedAt: 2024-04-28 21:20:40 -0000 (Sun, 28 Apr 2024)
EndedAt: 2024-04-28 21:22:37 -0000 (Sun, 28 Apr 2024)
EllapsedTime: 117.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data Chicago
###
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* checking for file ‘Chicago/DESCRIPTION’ ... OK
* preparing ‘Chicago’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Chicago.Rmd’ using rmarkdown
Read 4 items

Quitting from lines  at lines 285-289 [unnamed-chunk-19] (Chicago.Rmd)
Error: processing vignette 'Chicago.Rmd' failed with diagnostics:
Corrupt Cache: index file
  See AnnotationHub's TroubleshootingTheHubs vignette section on corrupt cache
  cache: /home/biocbuild/.cache/R/AnnotationHub
  filename: annotationhub.index.rds
--- failed re-building ‘Chicago.Rmd’

SUMMARY: processing the following file failed:
  ‘Chicago.Rmd’

Error: Vignette re-building failed.
Execution halted