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This page was generated on 2024-05-06 11:37:39 -0400 (Mon, 06 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4661
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4392
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4423
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 304/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Cepo 1.11.0  (landing page)
Hani Jieun Kim
Snapshot Date: 2024-05-03 14:05:06 -0400 (Fri, 03 May 2024)
git_url: https://git.bioconductor.org/packages/Cepo
git_branch: devel
git_last_commit: 4918ee6
git_last_commit_date: 2024-04-30 11:38:35 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64see weekly results here

BUILD results for Cepo on merida1


To the developers/maintainers of the Cepo package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Cepo.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: Cepo
Version: 1.11.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Cepo
StartedAt: 2024-05-03 17:47:52 -0400 (Fri, 03 May 2024)
EndedAt: 2024-05-03 17:51:08 -0400 (Fri, 03 May 2024)
EllapsedTime: 196.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Cepo
###
##############################################################################
##############################################################################


* checking for file ‘Cepo/DESCRIPTION’ ... OK
* preparing ‘Cepo’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cepo.Rmd’ using rmarkdown
2024-05-03 17:49:55.690 R[99584:540377787] XType: com.apple.fonts is not accessible.
2024-05-03 17:49:55.692 R[99584:540377787] XType: XTFontStaticRegistry is enabled.

Quitting from lines  at lines 284-297 [gsea] (cepo.Rmd)
Error: processing vignette 'cepo.Rmd' failed with diagnostics:
unable to find an inherited method for function 'geneIds' for signature 'object = "list"'
--- failed re-building ‘cepo.Rmd’

SUMMARY: processing the following file failed:
  ‘cepo.Rmd’

Error: Vignette re-building failed.
Execution halted