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This page was generated on 2024-05-17 11:36:28 -0400 (Fri, 17 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4663
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4398
merida1macOS 12.7.4 Montereyx86_644.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" 4425
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 288/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellaRepertorium 1.15.0  (landing page)
Andrew McDavid
Snapshot Date: 2024-05-15 14:05:05 -0400 (Wed, 15 May 2024)
git_url: https://git.bioconductor.org/packages/CellaRepertorium
git_branch: devel
git_last_commit: eb648b9
git_last_commit_date: 2024-04-30 11:29:02 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.4 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64see weekly results here

BUILD results for CellaRepertorium on nebbiolo2


To the developers/maintainers of the CellaRepertorium package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellaRepertorium.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: CellaRepertorium
Version: 1.15.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 CellaRepertorium
StartedAt: 2024-05-15 16:25:37 -0400 (Wed, 15 May 2024)
EndedAt: 2024-05-15 16:27:06 -0400 (Wed, 15 May 2024)
EllapsedTime: 89.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 CellaRepertorium
###
##############################################################################
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* checking for file ‘CellaRepertorium/DESCRIPTION’ ... OK
* preparing ‘CellaRepertorium’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to process help pages
* creating vignettes ... ERROR
--- re-building ‘cdr3_clustering.Rmd’ using rmarkdown

Quitting from lines 202-208 [unnamed-chunk-17] (cdr3_clustering.Rmd)
Error: processing vignette 'cdr3_clustering.Rmd' failed with diagnostics:
ℹ In index: 1.
ℹ With name: TRA.
Caused by error in `.make_numeric_version()`:
! invalid non-character version specification 'x' (type: double)
--- failed re-building ‘cdr3_clustering.Rmd’

--- re-building ‘cr-overview.Rmd’ using rmarkdown
--- finished re-building ‘cr-overview.Rmd’

--- re-building ‘mouse_tcell_qc.Rmd’ using rmarkdown
--- finished re-building ‘mouse_tcell_qc.Rmd’

--- re-building ‘repertoire_and_expression.Rmd’ using rmarkdown
--- finished re-building ‘repertoire_and_expression.Rmd’

SUMMARY: processing the following file failed:
  ‘cdr3_clustering.Rmd’

Error: Vignette re-building failed.
Execution halted