Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-05-17 11:36:31 -0400 (Fri, 17 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4663 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4398 |
merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4425 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 434/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
COTAN 2.5.2 (landing page) Galfrè Silvia Giulia
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
merida1 | macOS 12.7.4 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the COTAN package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/COTAN.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: COTAN |
Version: 2.5.2 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 COTAN |
StartedAt: 2024-05-15 16:42:29 -0400 (Wed, 15 May 2024) |
EndedAt: 2024-05-15 16:43:27 -0400 (Wed, 15 May 2024) |
EllapsedTime: 58.4 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 COTAN ### ############################################################################## ############################################################################## * checking for file ‘COTAN/DESCRIPTION’ ... OK * preparing ‘COTAN’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Guided_tutorial_v2.Rmd’ using rmarkdown trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2861nnn/GSM2861514/suppl//GSM2861514_E175_Only_Cortical_Cells_DGE.txt.gz?tool=geoquery' Content type 'application/x-gzip' length 1509523 bytes (1.4 MB) ================================================== downloaded 1.4 MB Quitting from lines 64-92 [unnamed-chunk-4] (Guided_tutorial_v2.Rmd) Error: processing vignette 'Guided_tutorial_v2.Rmd' failed with diagnostics: Lantern is not loaded. Please use `install_torch()` to install additional dependencies. --- failed re-building ‘Guided_tutorial_v2.Rmd’ SUMMARY: processing the following file failed: ‘Guided_tutorial_v2.Rmd’ Error: Vignette re-building failed. Execution halted