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This page was generated on 2024-04-29 11:40:35 -0400 (Mon, 29 Apr 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4752
palomino3Windows Server 2022 Datacenterx644.4.0 beta (2024-04-15 r86425 ucrt) -- "Puppy Cup" 4486
lconwaymacOS 12.7.1 Montereyx86_644.4.0 beta (2024-04-14 r86421) -- "Puppy Cup" 4518
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4475
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 223/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiRewire 3.35.0  (landing page)
Andrea Gobbi
Snapshot Date: 2024-04-28 14:00:16 -0400 (Sun, 28 Apr 2024)
git_url: https://git.bioconductor.org/packages/BiRewire
git_branch: devel
git_last_commit: 8a859c8
git_last_commit_date: 2023-10-24 09:55:50 -0400 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    WARNINGS  
kjohnson3macOS 13.6.5 Ventura / arm64see weekly results here

INSTALL results for BiRewire on kunpeng2


To the developers/maintainers of the BiRewire package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiRewire.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: BiRewire
Version: 3.35.0
Command: /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL BiRewire
StartedAt: 2024-04-28 19:07:31 -0000 (Sun, 28 Apr 2024)
EndedAt: 2024-04-28 19:07:48 -0000 (Sun, 28 Apr 2024)
EllapsedTime: 17.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD INSTALL BiRewire
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-beta-2024-04-15_r86425/site-library’
* installing *source* package ‘BiRewire’ ...
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 10.3.1’
gcc -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -c BiRewire.c -o BiRewire.o
BiRewire.c: In function ‘analysis’:
BiRewire.c:149:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
  149 |   Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                    ~^             ~~~~~~~~~~~
      |                     |             |
      |                     int           time_t {aka long int}
      |                    %ld
BiRewire.c: In function ‘analysis_ex’:
BiRewire.c:221:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
  221 |     Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                      ~^             ~~~~~~~~~~~
      |                       |             |
      |                       int           time_t {aka long int}
      |                      %ld
BiRewire.c:229:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
  229 |   Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                    ~^             ~~~~~~~~~~~
      |                     |             |
      |                     int           time_t {aka long int}
      |                    %ld
BiRewire.c: In function ‘rewire_bipartite’:
BiRewire.c:280:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
  280 |   Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                    ~^             ~~~~~~~~~~~
      |                     |             |
      |                     int           time_t {aka long int}
      |                    %ld
BiRewire.c: In function ‘rewire_bipartite_ex’:
BiRewire.c:332:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
  332 |     Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                      ~^             ~~~~~~~~~~~
      |                       |             |
      |                       int           time_t {aka long int}
      |                      %ld
BiRewire.c:339:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
  339 |   Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                    ~^             ~~~~~~~~~~~
      |                     |             |
      |                     int           time_t {aka long int}
      |                    %ld
BiRewire.c: In function ‘rewire_sparse_bipartite’:
BiRewire.c:402:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
  402 |   Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                    ~^             ~~~~~~~~~~~
      |                     |             |
      |                     int           time_t {aka long int}
      |                    %ld
BiRewire.c: In function ‘rewire_sparse_bipartite_ex’:
BiRewire.c:454:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
  454 |     Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                      ~^             ~~~~~~~~~~~
      |                       |             |
      |                       int           time_t {aka long int}
      |                      %ld
BiRewire.c:461:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
  461 |   Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                    ~^             ~~~~~~~~~~~
      |                     |             |
      |                     int           time_t {aka long int}
      |                    %ld
BiRewire.c: In function ‘analysis_undirected’:
BiRewire.c:588:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
  588 |   Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                    ~^             ~~~~~~~~~~~
      |                     |             |
      |                     int           time_t {aka long int}
      |                    %ld
BiRewire.c: In function ‘analysis_undirected_ex’:
BiRewire.c:652:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
  652 |     Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                      ~^             ~~~~~~~~~~~
      |                       |             |
      |                       int           time_t {aka long int}
      |                      %ld
BiRewire.c:737:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
  737 |   Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                    ~^             ~~~~~~~~~~~
      |                     |             |
      |                     int           time_t {aka long int}
      |                    %ld
BiRewire.c: In function ‘rewire’:
BiRewire.c:844:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
  844 |   Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                    ~^             ~~~~~~~~~~~
      |                     |             |
      |                     int           time_t {aka long int}
      |                    %ld
BiRewire.c: In function ‘rewire_ex’:
BiRewire.c:893:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
  893 |     Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                      ~^             ~~~~~~~~~~~
      |                       |             |
      |                       int           time_t {aka long int}
      |                      %ld
BiRewire.c:962:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
  962 |   Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                    ~^             ~~~~~~~~~~~
      |                     |             |
      |                     int           time_t {aka long int}
      |                    %ld
BiRewire.c: In function ‘rewire_sparse’:
BiRewire.c:1066:16: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
 1066 |   if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
      |               ~^~~
BiRewire.c:1096:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
 1096 |   Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                    ~^             ~~~~~~~~~~~
      |                     |             |
      |                     int           time_t {aka long int}
      |                    %ld
BiRewire.c: In function ‘rewire_sparse_ex’:
BiRewire.c:1144:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
 1144 |     Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                      ~^             ~~~~~~~~~~~
      |                       |             |
      |                       int           time_t {aka long int}
      |                      %ld
BiRewire.c:1149:16: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
 1149 |   if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) {
      |               ~^~~
BiRewire.c:1183:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘time_t’ {aka ‘long int’} [-Wformat=]
 1183 |   Rprintf("DONE in %d seconds \n",-(tin-tfin));
      |                    ~^             ~~~~~~~~~~~
      |                     |             |
      |                     int           time_t {aka long int}
      |                    %ld
gcc -I"/home/biocbuild/R/R-beta-2024-04-15_r86425/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -c interface.c -o interface.o
interface.c: In function ‘R_rewire_bipartite’:
interface.c:105:11: warning: too many arguments for format [-Wformat-extra-args]
  105 |   warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
interface.c: In function ‘R_rewire_sparse_bipartite’:
interface.c:147:11: warning: too many arguments for format [-Wformat-extra-args]
  147 |   warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
interface.c: In function ‘R_rewire’:
interface.c:252:11: warning: too many arguments for format [-Wformat-extra-args]
  252 |   warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
interface.c: In function ‘R_rewire_sparse’:
interface.c:296:11: warning: too many arguments for format [-Wformat-extra-args]
  296 |   warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER));
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -shared -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -L/usr/local/lib -o BiRewire.so BiRewire.o interface.o -L/home/biocbuild/R/R-beta-2024-04-15_r86425/lib -lR
installing to /home/biocbuild/R/R-beta-2024-04-15_r86425/site-library/00LOCK-BiRewire/00new/BiRewire/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiRewire)