Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-05-10 11:36:55 -0400 (Fri, 10 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4662 |
palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4393 |
merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4424 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 253/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
BUSseq 1.11.0 (landing page) Fangda Song
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino4 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the BUSseq package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BUSseq.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: BUSseq |
Version: 1.11.0 |
Command: chmod a+r BUSseq -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BUSseq |
StartedAt: 2024-05-08 17:19:21 -0400 (Wed, 08 May 2024) |
EndedAt: 2024-05-08 17:24:16 -0400 (Wed, 08 May 2024) |
EllapsedTime: 295.0 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r BUSseq -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BUSseq ### ############################################################################## ############################################################################## * checking for file 'BUSseq/DESCRIPTION' ... OK * preparing 'BUSseq': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to process help pages * saving partial Rd database * creating vignettes ... ERROR --- re-building 'BUSseq_user_guide.Rnw' using knitr Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 1033 Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "BUSseq_user_guide.tex" ' had status 1033 Error: processing vignette 'BUSseq_user_guide.Rnw' failed with diagnostics: Failed to locate 'texi2pdf' output file 'BUSseq_user_guide.pdf' for vignette with name 'BUSseq_user_guide' and engine 'knitr::knitr'. The following files exist in working directory 'F:\biocbuild\bbs-3.20-bioc\tmpdir\Rtmpcv5Xai\Rbuild3b342b48cde\BUSseq\vignettes': 'BUSseq_user_guide.R' (4941 bytes), 'BUSseq_user_guide.Rnw' (21304 bytes), 'BUSseq_user_guide.tex' (38988 bytes), 'user_guide.bib' (5677 bytes) --- failed re-building 'BUSseq_user_guide.Rnw' SUMMARY: processing the following file failed: 'BUSseq_user_guide.Rnw' Error: Vignette re-building failed. Execution halted