Back to Multiple platform build/check report for BioC 3.17: simplified long |
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This page was generated on 2023-03-29 11:06:17 -0400 (Wed, 29 Mar 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" | 4547 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" | 4308 |
merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences" | 4301 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the HiCBricks package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 911/2195 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HiCBricks 1.17.0 (landing page) Koustav Pal
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: HiCBricks |
Version: 1.17.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HiCBricks_1.17.0.tar.gz |
StartedAt: 2023-03-29 01:16:33 -0400 (Wed, 29 Mar 2023) |
EndedAt: 2023-03-29 01:23:29 -0400 (Wed, 29 Mar 2023) |
EllapsedTime: 415.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HiCBricks.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HiCBricks_1.17.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.17-bioc/meat/HiCBricks.Rcheck’ * using R Under development (unstable) (2023-03-16 r83985) * using platform: x86_64-apple-darwin17.0 (64-bit) * R was compiled by Apple clang version 12.0.0 (clang-1200.0.32.29) GNU Fortran (GCC) 8.2.0 * running under: macOS Mojave 10.14.6 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HiCBricks/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HiCBricks’ version ‘1.17.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HiCBricks’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed Brick_export_to_sparse 5.490 0.239 7.898 Brick_vizart_plot_heatmap 4.412 0.205 6.048 BrickContainer_unlink_resolution 3.957 0.144 5.619 Brick_local_score_differentiator 3.760 0.218 5.090 Brick_add_ranges 3.874 0.084 5.301 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3/Resources/library’ * installing *source* package ‘HiCBricks’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
name | user | system | elapsed | |
BrickContainer_change_experiment_name | 2.623 | 0.110 | 3.769 | |
BrickContainer_change_output_directory | 1.963 | 0.071 | 2.712 | |
BrickContainer_get_path_to_file | 1.815 | 0.062 | 2.449 | |
BrickContainer_list_chromosomes | 1.809 | 0.061 | 2.459 | |
BrickContainer_list_experiment_name | 1.825 | 0.060 | 2.494 | |
BrickContainer_list_files | 1.841 | 0.061 | 2.508 | |
BrickContainer_list_output_directory | 1.837 | 0.062 | 2.471 | |
BrickContainer_list_resolutions | 1.804 | 0.062 | 2.412 | |
BrickContainer_unlink_resolution | 3.957 | 0.144 | 5.619 | |
Brick_add_ranges | 3.874 | 0.084 | 5.301 | |
Brick_call_compartments | 2.834 | 0.179 | 4.165 | |
Brick_export_to_sparse | 5.490 | 0.239 | 7.898 | |
Brick_fetch_range_index | 2.146 | 0.064 | 3.089 | |
Brick_fetch_row_vector | 3.526 | 0.151 | 4.882 | |
Brick_get_bintable | 1.822 | 0.058 | 2.545 | |
Brick_get_chrominfo | 1.751 | 0.058 | 2.391 | |
Brick_get_entire_matrix | 2.544 | 0.161 | 3.607 | |
Brick_get_matrix | 2.460 | 0.137 | 3.402 | |
Brick_get_matrix_mcols | 2.458 | 0.147 | 3.395 | |
Brick_get_matrix_within_coords | 3.505 | 0.152 | 4.818 | |
Brick_get_ranges | 1.902 | 0.060 | 2.684 | |
Brick_get_values_by_distance | 2.741 | 0.175 | 3.697 | |
Brick_get_vector_values | 2.525 | 0.139 | 3.454 | |
Brick_list_matrices | 1.797 | 0.059 | 2.554 | |
Brick_list_matrix_mcols | 1.740 | 0.058 | 2.396 | |
Brick_list_mcool_normalisations | 0 | 0 | 0 | |
Brick_list_mcool_resolutions | 0.000 | 0.000 | 0.001 | |
Brick_list_rangekeys | 1.753 | 0.057 | 2.373 | |
Brick_list_ranges_mcols | 1.742 | 0.061 | 2.352 | |
Brick_load_cis_matrix_till_distance | 2.293 | 0.117 | 3.151 | |
Brick_load_data_from_mcool | 0.000 | 0.001 | 0.000 | |
Brick_load_data_from_sparse | 0 | 0 | 0 | |
Brick_load_matrix | 2.404 | 0.139 | 3.331 | |
Brick_local_score_differentiator | 3.760 | 0.218 | 5.090 | |
Brick_make_ranges | 0.020 | 0.001 | 0.027 | |
Brick_matrix_dimensions | 2.408 | 0.136 | 3.429 | |
Brick_matrix_exists | 2.393 | 0.145 | 3.320 | |
Brick_matrix_filename | 2.405 | 0.133 | 3.291 | |
Brick_matrix_isdone | 2.429 | 0.139 | 3.304 | |
Brick_matrix_issparse | 2.437 | 0.139 | 3.308 | |
Brick_matrix_maxdist | 2.435 | 0.129 | 3.261 | |
Brick_matrix_minmax | 2.415 | 0.129 | 3.272 | |
Brick_mcool_normalisation_exists | 0.001 | 0.000 | 0.000 | |
Brick_rangekey_exists | 1.771 | 0.062 | 2.334 | |
Brick_return_region_position | 1.976 | 0.061 | 2.552 | |
Brick_vizart_plot_heatmap | 4.412 | 0.205 | 6.048 | |
Create_many_Bricks | 1.805 | 0.069 | 2.428 | |
Create_many_Bricks_from_mcool | 0.000 | 0.000 | 0.001 | |
load_BrickContainer | 1.888 | 0.063 | 2.552 | |