Multiple platform build/check report for BioC 3.17 - BUILD results for Gviz on palomino3

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This page was generated on 2023-03-31 11:03:08 -0400 (Fri, 31 Mar 2023).

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.1 LTS)	x86_64	R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences"	4547
palomino3	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences"	4308
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for Gviz on palomino3

To the developers/maintainers of the Gviz package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Gviz.git to reflect on this report. See Troubleshooting Build Report for more information.

- Use the following Renviron settings to reproduce errors and warnings.

Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details.

raw results

Gviz 1.43.1 (landing page)
Robert Ivanek

Snapshot Date: 2023-03-30 14:00:16 -0400 (Thu, 30 Mar 2023)

git_url: https://git.bioconductor.org/packages/Gviz

git_branch: devel

git_last_commit: c60b082

git_last_commit_date: 2023-03-15 06:30:36 -0400 (Wed, 15 Mar 2023)

nebbiolo1

Linux (Ubuntu 22.04.1 LTS) / x86_64

ERROR

skipped

palomino3

Windows Server 2022 Datacenter / x64

ERROR

skipped

Summary

Package: Gviz

Version: 1.43.1

Command: chmod a+r Gviz -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Gviz

StartedAt: 2023-03-30 19:27:38 -0400 (Thu, 30 Mar 2023)

EndedAt: 2023-03-30 19:30:38 -0400 (Thu, 30 Mar 2023)

EllapsedTime: 180.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r Gviz -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Gviz
###
##############################################################################
##############################################################################


* checking for file 'Gviz/DESCRIPTION' ... OK
* preparing 'Gviz':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'Gviz.Rmd' using rmarkdown
Quitting from lines 1808-1820 (Gviz.Rmd) 
Error: processing vignette 'Gviz.Rmd' failed with diagnostics:
non-numeric argument to binary operator
--- failed re-building 'Gviz.Rmd'

SUMMARY: processing the following file failed:
  'Gviz.Rmd'

Error: Vignette re-building failed.
Execution halted