| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-10-16 11:35:18 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 524/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DelayedTensor 1.6.0 (landing page) Koki Tsuyuzaki
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the DelayedTensor package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DelayedTensor.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: DelayedTensor |
| Version: 1.6.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:DelayedTensor.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings DelayedTensor_1.6.0.tar.gz |
| StartedAt: 2023-10-15 20:42:19 -0400 (Sun, 15 Oct 2023) |
| EndedAt: 2023-10-15 20:49:26 -0400 (Sun, 15 Oct 2023) |
| EllapsedTime: 426.4 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: DelayedTensor.Rcheck |
| Warnings: 1 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:DelayedTensor.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings DelayedTensor_1.6.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/DelayedTensor.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘DelayedTensor/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DelayedTensor’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DelayedTensor’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.block_khatri_rao_IDX2: no visible global function definition for
‘Lindex2Mindex’
.block_khatri_rao_IDX2: no visible global function definition for
‘Mindex2Lindex’
.block_kroneckerIDX: no visible global function definition for
‘Lindex2Mindex’
.block_kroneckerIDX: no visible global function definition for
‘Mindex2Lindex’
.block_reshape: no visible global function definition for
‘Lindex2Mindex’
.block_vec: no visible global function definition for ‘Mindex2Lindex’
.read_block_einsum: no visible global function definition for
‘Mindex2Lindex’
.tickMarksScheduling2: no visible global function definition for
‘Mindex2Lindex’
.write_block_einsum: no visible global function definition for
‘Mindex2Lindex’
einsum: no visible global function definition for ‘Lindex2Mindex’
Undefined global functions or variables:
Lindex2Mindex Mindex2Lindex
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
human_mid_brain.rda 677Kb 442Kb xz
mouse_mid_brain.rda 761Kb 511Kb xz
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
cp 102.912 2.698 106.068
tucker 15.254 0.356 15.620
mpca 7.557 0.136 7.696
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘DelayedTensor_1.Rmd’ using ‘UTF-8’... OK
‘DelayedTensor_2.Rmd’ using ‘UTF-8’... OK
‘DelayedTensor_3.Rmd’ using ‘UTF-8’... OK
‘DelayedTensor_4.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
‘/home/biocbuild/bbs-3.17-bioc/meat/DelayedTensor.Rcheck/00check.log’
for details.
DelayedTensor.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL DelayedTensor ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘DelayedTensor’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘kronecker’ in package ‘DelayedTensor’ Creating a new generic function for ‘diag’ in package ‘DelayedTensor’ Creating a new generic function for ‘diag<-’ in package ‘DelayedTensor’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DelayedTensor)
DelayedTensor.Rcheck/tests/testthat.Rout
R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("DelayedArray")
Loading required package: stats4
Loading required package: Matrix
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: MatrixGenerics
Loading required package: matrixStats
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
colWeightedMeans, colWeightedMedians, colWeightedSds,
colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
rowWeightedSds, rowWeightedVars
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:Matrix':
expand, unname
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Loading required package: S4Arrays
Loading required package: abind
Attaching package: 'S4Arrays'
The following object is masked from 'package:abind':
abind
The following object is masked from 'package:base':
rowsum
Attaching package: 'DelayedArray'
The following objects are masked from 'package:base':
apply, scale, sweep
> # library("HDF5Array") # comment out
> # library("BiocSingular") # comment out
> library("rTensor")
Attaching package: 'rTensor'
The following object is masked from 'package:S4Vectors':
fold
> library("DelayedRandomArray")
> # library("irlba") # comment out
> # library("Matrix") # comment out
> library("einsum")
> library("DelayedTensor")
Attaching package: 'DelayedTensor'
The following object is masked from 'package:einsum':
einsum
The following objects are masked from 'package:rTensor':
cp, cs_fold, cs_unfold, fnorm, fold, hadamard_list, hosvd,
innerProd, k_fold, k_unfold, khatri_rao, khatri_rao_list,
kronecker_list, matvec, modeMean, modeSum, mpca, pvd, rs_fold,
rs_unfold, ttl, ttm, tucker, unfold, unmatvec, vec
The following object is masked from 'package:S4Vectors':
fold
The following objects are masked from 'package:Matrix':
diag, diag<-, kronecker
The following object is masked from 'package:methods':
kronecker
The following objects are masked from 'package:base':
diag, diag<-, kronecker
> library("reticulate")
> library("testthat")
> library("HDF5Array")
Loading required package: rhdf5
Attaching package: 'HDF5Array'
The following object is masked from 'package:rhdf5':
h5ls
>
> # Setting
> options(testthat.use_colours = FALSE)
> options(delayedtensor.sparse = FALSE)
> options(delayedtensor.verbose = FALSE)
> setHDF5DumpCompressionLevel(level=9L)
> source("testthat/test_Einsum_objects.R")
>
> # source("../R/Decomp.R") # comment out
> # source("../R/Einsum.R") # comment out
> # source("../R/Generics.R") # comment out
> # source("../R/Global-settings.R") # comment out
> # source("../R/Misc.R") # comment out
> # source("../R/SVD.R") # comment out
> # source("../R/Utils.R") # comment out
> # source("../R/zzz.R") # comment out
>
> # for(size in c(1E+9,1E+8,1E+7,1E+6,1E+5,1E+4,1E+3,1E+2,50,20:1)){ # comment out
> # setAutoBlockSize(size=size) # comment out
> # getAutoBlockSize() # comment out
> test_file("testthat/test_Generics.R")
══ Testing test_Generics.R ═════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 11 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 12 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 14 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 17 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 19 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 20 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 21 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 23 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 25 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 26 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 27 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 28 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 28 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 29 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 30 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 30 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 31 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 31 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 32 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 32 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 33 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 33 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 34 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 35 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 35 ]
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 35 ]
── Error ('test_Generics.R:168:1'): (code run outside of `test_that()`) ────────
Error in `all.equal.numeric(x, y, tolerance = tolerance, check.attributes = check.attributes,
...)`: length(tolerance) == 1L is not TRUE
Backtrace:
▆
1. └─testthat::expect_equal(tnsr@data, tnsr2@data, as.array(darr2)) at test_Generics.R:168:0
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.numeric(act$val, exp$val, ...)
4. ├─base::all.equal(...)
5. └─base::all.equal.numeric(...)
6. └─base::stopifnot(length(tolerance) == 1L)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 35 ]
> test_file("testthat/test_Misc.R")
══ Testing test_Misc.R ═════════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ]
── Error ('test_Misc.R:29:1'): (code run outside of `test_that()`) ─────────────
Error in `all.equal.numeric(x, y, tolerance = tolerance, check.attributes = check.attributes,
...)`: length(tolerance) == 1L is not TRUE
Backtrace:
▆
1. └─testthat::expect_equal(...) at test_Misc.R:29:0
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.numeric(act$val, exp$val, ...)
4. ├─base::all.equal(...)
5. └─base::all.equal.numeric(...)
6. └─base::stopifnot(length(tolerance) == 1L)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ]
> # test_file("testthat/test_SVD.R") # comment out
> test_file("testthat/test_4thorder.R")
══ Testing test_4thorder.R ═════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ][1] "unfold"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 7 ][1] "modeSum"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 11 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 12 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 14 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ][1] "innerProd"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 16 ][1] "vec"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 17 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 17 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ][1] "fold"
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 18 ]
── Error ('test_4thorder.R:91:1'): (code run outside of `test_that()`) ─────────
Error in `all.equal.numeric(x, y, tolerance = tolerance, check.attributes = check.attributes,
...)`: length(tolerance) == 1L is not TRUE
Backtrace:
▆
1. └─testthat::expect_equal(arr4, tnsr4_2@data, as.array(darr4_2)) at test_4thorder.R:91:0
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.numeric(act$val, exp$val, ...)
4. ├─base::all.equal(...)
5. └─base::all.equal.numeric(...)
6. └─base::stopifnot(length(tolerance) == 1L)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 18 ]
> test_file("testthat/test_Einsum.R")
══ Testing test_Einsum.R ═══════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
── Error ('test_Einsum.R:4:1'): (code run outside of `test_that()`) ────────────
Error in `all.equal.numeric(x, y, tolerance = tolerance, check.attributes = check.attributes,
...)`: length(tolerance) == 1L is not TRUE
Backtrace:
▆
1. └─testthat::expect_equal(...) at test_Einsum.R:4:0
2. ├─testthat::compare(act$val, exp$val, ...)
3. └─testthat:::compare.numeric(act$val, exp$val, ...)
4. ├─base::all.equal(...)
5. └─base::all.equal.numeric(...)
6. └─base::stopifnot(length(tolerance) == 1L)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
> # gc();gc() # comment out
> # } # comment out
>
> # setAutoBlockSize(size=1E+8)
> # test_file("testthat/test_Decomp.R")
> # test_file("testthat/test_Einsum_Py.R") # comment out
> # source("testthat/test_Verbose.R")
> # source("testthat/test_Sparse.R")
>
> # Profiling
> # source("testthat/test_SuperBig.R") # comment out
>
> proc.time()
user system elapsed
17.41 0.81 20.01
DelayedTensor.Rcheck/DelayedTensor-Ex.timings
| name | user | system | elapsed | |
| DelayedDiagonalArray | 0.050 | 0.000 | 0.051 | |
| DelayedTensor-package | 0.001 | 0.000 | 0.000 | |
| cbind_list | 0.969 | 0.008 | 0.978 | |
| cp | 102.912 | 2.698 | 106.068 | |
| cs_fold | 0.293 | 0.024 | 0.317 | |
| cs_unfold | 0.230 | 0.004 | 0.234 | |
| diag | 0.364 | 0.016 | 0.380 | |
| einsum | 0.801 | 0.024 | 0.826 | |
| fnorm | 0.093 | 0.008 | 0.101 | |
| fold | 0.352 | 0.012 | 0.363 | |
| getSparse | 0.000 | 0.001 | 0.000 | |
| getVerbose | 0.000 | 0.001 | 0.000 | |
| hadamard | 0.203 | 0.006 | 0.210 | |
| hadamard_list | 0.215 | 0.004 | 0.218 | |
| hosvd | 2.517 | 0.072 | 2.590 | |
| human_mid_brain | 0.002 | 0.000 | 0.002 | |
| innerProd | 0.101 | 0.000 | 0.101 | |
| k_fold | 0.360 | 0.004 | 0.364 | |
| k_unfold | 0.267 | 0.004 | 0.270 | |
| khatri_rao | 0.220 | 0.004 | 0.224 | |
| khatri_rao_list | 0.185 | 0.004 | 0.189 | |
| kronecker | 0.096 | 0.004 | 0.100 | |
| kronecker_list | 0.235 | 0.000 | 0.235 | |
| list_rep | 0.180 | 0.008 | 0.188 | |
| matvec | 0.224 | 0.004 | 0.228 | |
| modeMean | 1.132 | 0.020 | 1.153 | |
| modeSum | 0.985 | 0.032 | 1.017 | |
| modebind_list | 0.961 | 0.016 | 0.978 | |
| mouse_mid_brain | 0.001 | 0.000 | 0.001 | |
| mpca | 7.557 | 0.136 | 7.696 | |
| outerProd | 0.255 | 0.020 | 0.275 | |
| pvd | 4.226 | 0.088 | 4.523 | |
| rbind_list | 0.327 | 0.012 | 0.338 | |
| rs_fold | 0.395 | 0.004 | 0.399 | |
| rs_unfold | 0.202 | 0.008 | 0.210 | |
| setSparse | 0.001 | 0.000 | 0.000 | |
| setVerbose | 0 | 0 | 0 | |
| ttl | 0.703 | 0.036 | 0.739 | |
| ttm | 0.507 | 0.004 | 0.510 | |
| tucker | 15.254 | 0.356 | 15.620 | |
| unfold | 0.207 | 0.000 | 0.207 | |
| unmatvec | 0.339 | 0.000 | 0.339 | |
| vec | 0.542 | 0.200 | 0.742 | |