Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-05-25 12:06:41 -0400 (Wed, 25 May 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4380
palomino3Windows Server 2022 Datacenterx644.2.0 (2022-04-22 ucrt) -- "Vigorous Calisthenics" 4155
merida1macOS 10.14.6 Mojavex86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4221
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for HilbertCurve on palomino3


To the developers/maintainers of the HilbertCurve package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HilbertCurve.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 896/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HilbertCurve 1.26.0  (landing page)
Zuguang Gu
Snapshot Date: 2022-05-24 13:55:11 -0400 (Tue, 24 May 2022)
git_url: https://git.bioconductor.org/packages/HilbertCurve
git_branch: RELEASE_3_15
git_last_commit: 0b7de6e
git_last_commit_date: 2022-04-26 11:26:28 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: HilbertCurve
Version: 1.26.0
Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HilbertCurve.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings HilbertCurve_1.26.0.tar.gz
StartedAt: 2022-05-25 00:44:17 -0400 (Wed, 25 May 2022)
EndedAt: 2022-05-25 00:46:49 -0400 (Wed, 25 May 2022)
EllapsedTime: 152.8 seconds
RetCode: 0
Status:   OK  
CheckDir: HilbertCurve.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HilbertCurve.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings HilbertCurve_1.26.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.15-bioc/meat/HilbertCurve.Rcheck'
* using R version 4.2.0 (2022-04-22 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'HilbertCurve/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HilbertCurve' version '1.26.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HilbertCurve' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                     user system elapsed
hc_layer-GenomicHilbertCurve-method 11.38   0.27   12.15
hc_layer-HilbertCurve-method        10.94   0.37   11.73
GenomicHilbertCurve                  7.42   0.22    8.37
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'test-all.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

HilbertCurve.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL HilbertCurve
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'HilbertCurve' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HilbertCurve)

Tests output

HilbertCurve.Rcheck/tests/test-all.Rout


R version 4.2.0 (2022-04-22 ucrt) -- "Vigorous Calisthenics"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
> 
> test_check("HilbertCurve")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
> 
> proc.time()
   user  system elapsed 
   4.26    0.40    4.87 

Example timings

HilbertCurve.Rcheck/HilbertCurve-Ex.timings

nameusersystemelapsed
GenomicHilbertCurve-class000
GenomicHilbertCurve7.420.228.37
HilbertCurve-class000
HilbertCurve0.790.010.81
default_overlay000
hc_centered_text-HilbertCurve-method0.190.000.19
hc_layer-GenomicHilbertCurve-method11.38 0.2712.15
hc_layer-HilbertCurve-method10.94 0.3711.73
hc_layer-dispatch000
hc_level-HilbertCurve-method0.030.000.03
hc_map-GenomicHilbertCurve-method3.480.053.63
hc_normal_points-HilbertCurve-method000
hc_offset-HilbertCurve-method0.020.000.01
hc_png-HilbertCurve-method2.980.133.11
hc_points-GenomicHilbertCurve-method0.310.010.33
hc_points-HilbertCurve-method0.440.030.46
hc_points-dispatch000
hc_polygon-GenomicHilbertCurve-method0.360.030.39
hc_polygon-HilbertCurve-method0.100.000.09
hc_polygon-dispatch000
hc_rect-GenomicHilbertCurve-method0.280.020.30
hc_rect-HilbertCurve-method0.070.000.08
hc_rect-dispatch000
hc_segmented_points-HilbertCurve-method000
hc_segments-GenomicHilbertCurve-method0.550.020.56
hc_segments-HilbertCurve-method0.140.000.14
hc_segments-dispatch000
hc_text-GenomicHilbertCurve-method0.270.000.27
hc_text-HilbertCurve-method0.080.000.08
hc_text-dispatch000
is_white000
show-HilbertCurve-method0.010.000.01
unzoom-HilbertCurve-method0.020.000.02
zoom-HilbertCurve-method000