Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-05-25 12:05:26 -0400 (Wed, 25 May 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4380
palomino3Windows Server 2022 Datacenterx644.2.0 (2022-04-22 ucrt) -- "Vigorous Calisthenics" 4155
merida1macOS 10.14.6 Mojavex86_644.2.0 (2022-04-22) -- "Vigorous Calisthenics" 4221
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for HilbertCurve on nebbiolo1


To the developers/maintainers of the HilbertCurve package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HilbertCurve.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 896/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HilbertCurve 1.26.0  (landing page)
Zuguang Gu
Snapshot Date: 2022-05-24 13:55:11 -0400 (Tue, 24 May 2022)
git_url: https://git.bioconductor.org/packages/HilbertCurve
git_branch: RELEASE_3_15
git_last_commit: 0b7de6e
git_last_commit_date: 2022-04-26 11:26:28 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: HilbertCurve
Version: 1.26.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings HilbertCurve_1.26.0.tar.gz
StartedAt: 2022-05-24 20:06:36 -0400 (Tue, 24 May 2022)
EndedAt: 2022-05-24 20:08:30 -0400 (Tue, 24 May 2022)
EllapsedTime: 113.0 seconds
RetCode: 0
Status:   OK  
CheckDir: HilbertCurve.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings HilbertCurve_1.26.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/HilbertCurve.Rcheck’
* using R version 4.2.0 (2022-04-22)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.26.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                     user system elapsed
hc_layer-HilbertCurve-method        9.851  0.145   9.998
hc_layer-GenomicHilbertCurve-method 8.118  0.084   8.202
GenomicHilbertCurve                 6.152  0.060   6.587
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

HilbertCurve.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL HilbertCurve
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’
* installing *source* package ‘HilbertCurve’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HilbertCurve)

Tests output

HilbertCurve.Rcheck/tests/test-all.Rout


R version 4.2.0 (2022-04-22) -- "Vigorous Calisthenics"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
> 
> test_check("HilbertCurve")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
> 
> proc.time()
   user  system elapsed 
  3.850   0.191   4.026 

Example timings

HilbertCurve.Rcheck/HilbertCurve-Ex.timings

nameusersystemelapsed
GenomicHilbertCurve-class0.0010.0000.000
GenomicHilbertCurve6.1520.0606.587
HilbertCurve-class000
HilbertCurve0.4870.0160.502
default_overlay0.0010.0000.001
hc_centered_text-HilbertCurve-method0.1000.0000.101
hc_layer-GenomicHilbertCurve-method8.1180.0848.202
hc_layer-HilbertCurve-method9.8510.1459.998
hc_layer-dispatch0.0000.0010.000
hc_level-HilbertCurve-method0.0230.0010.024
hc_map-GenomicHilbertCurve-method2.7520.0242.776
hc_normal_points-HilbertCurve-method0.0000.0000.001
hc_offset-HilbertCurve-method0.0070.0000.008
hc_png-HilbertCurve-method3.0140.0353.050
hc_points-GenomicHilbertCurve-method0.3150.0080.323
hc_points-HilbertCurve-method0.4630.0000.463
hc_points-dispatch0.0000.0000.001
hc_polygon-GenomicHilbertCurve-method0.3620.0000.362
hc_polygon-HilbertCurve-method0.0890.0000.088
hc_polygon-dispatch000
hc_rect-GenomicHilbertCurve-method0.2570.0040.260
hc_rect-HilbertCurve-method0.0670.0040.072
hc_rect-dispatch000
hc_segmented_points-HilbertCurve-method0.0000.0000.001
hc_segments-GenomicHilbertCurve-method0.4190.0060.425
hc_segments-HilbertCurve-method0.0960.0000.095
hc_segments-dispatch000
hc_text-GenomicHilbertCurve-method0.2160.0040.221
hc_text-HilbertCurve-method0.0580.0040.062
hc_text-dispatch000
is_white0.0010.0000.000
show-HilbertCurve-method0.0070.0000.006
unzoom-HilbertCurve-method0.0060.0000.006
zoom-HilbertCurve-method0.0020.0040.005