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This page was generated on 2021-10-19 15:52:18 -0400 (Tue, 19 Oct 2021).

CHECK results for geneLenDataBase on nebbiolo2

To the developers/maintainers of the geneLenDataBase package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 139/404HostnameOS / ArchINSTALLBUILDCHECK
geneLenDataBase 1.29.0  (landing page)
Matthew Young , Nadia Davidson
Snapshot Date: 2021-10-19 09:30:02 -0400 (Tue, 19 Oct 2021)
git_url: https://git.bioconductor.org/packages/geneLenDataBase
git_branch: master
git_last_commit: bf9926e
git_last_commit_date: 2021-05-19 11:30:36 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: geneLenDataBase
Version: 1.29.0
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings geneLenDataBase_1.29.0.tar.gz
StartedAt: 2021-10-19 12:18:22 -0400 (Tue, 19 Oct 2021)
EndedAt: 2021-10-19 12:25:51 -0400 (Tue, 19 Oct 2021)
EllapsedTime: 448.5 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings geneLenDataBase_1.29.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.29.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
supportedGeneIDs 0.108      0   14.14
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.14-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.



Installation output

geneLenDataBase.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL geneLenDataBase
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘geneLenDataBase’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0640.0000.063
anoCar1.genscan.LENGTH0.0410.0000.041
anoCar1.xenoRefGene.LENGTH0.6520.0160.667
anoGam1.ensGene.LENGTH0.0480.0000.048
anoGam1.geneid.LENGTH0.0370.0000.037
anoGam1.genscan.LENGTH0.0340.0000.035
apiMel1.genscan.LENGTH0.0290.0000.029
apiMel2.ensGene.LENGTH0.0690.0000.069
apiMel2.geneid.LENGTH0.0380.0000.038
apiMel2.genscan.LENGTH0.0890.0000.089
aplCal1.xenoRefGene.LENGTH0.3020.0000.302
bosTau2.geneSymbol.LENGTH0.0310.0000.031
bosTau2.geneid.LENGTH0.1930.0000.193
bosTau2.genscan.LENGTH0.0680.0000.068
bosTau2.refGene.LENGTH0.0290.0040.033
bosTau2.sgpGene.LENGTH0.1600.0160.176
bosTau3.ensGene.LENGTH0.0800.0000.081
bosTau3.geneSymbol.LENGTH0.0280.0000.028
bosTau3.geneid.LENGTH0.0860.0000.086
bosTau3.genscan.LENGTH0.0520.0000.052
bosTau3.refGene.LENGTH0.0240.0000.025
bosTau3.sgpGene.LENGTH0.0660.0000.066
bosTau4.ensGene.LENGTH0.0750.0000.075
bosTau4.geneSymbol.LENGTH0.0240.0000.024
bosTau4.genscan.LENGTH0.0480.0000.048
bosTau4.nscanGene.LENGTH0.0220.0000.022
bosTau4.refGene.LENGTH0.0250.0000.025
braFlo1.xenoRefGene.LENGTH0.2870.0000.287
caeJap1.xenoRefGene.LENGTH0.2560.0000.256
caePb1.xenoRefGene.LENGTH0.3270.0110.339
caePb2.xenoRefGene.LENGTH0.2940.0010.294
caeRem2.xenoRefGene.LENGTH0.3360.0080.343
caeRem3.xenoRefGene.LENGTH0.240.000.24
calJac1.genscan.LENGTH0.0640.0000.064
calJac1.nscanGene.LENGTH0.0790.0000.079
calJac1.xenoRefGene.LENGTH0.5150.0110.527
canFam1.ensGene.LENGTH0.0950.0000.095
canFam1.geneSymbol.LENGTH0.0050.0000.005
canFam1.genscan.LENGTH0.0560.0000.056
canFam1.nscanGene.LENGTH0.0570.0000.057
canFam1.refGene.LENGTH0.0050.0000.005
canFam1.xenoRefGene.LENGTH0.5990.0080.607
canFam2.ensGene.LENGTH0.0760.0000.076
canFam2.geneSymbol.LENGTH0.0040.0000.004
canFam2.genscan.LENGTH0.0470.0000.047
canFam2.nscanGene.LENGTH0.0560.0000.056
canFam2.refGene.LENGTH0.0040.0000.004
canFam2.xenoRefGene.LENGTH0.5020.0000.502
cavPor3.ensGene.LENGTH0.0980.0000.098
cavPor3.genscan.LENGTH0.0930.0000.093
cavPor3.nscanGene.LENGTH0.0680.0080.076
cavPor3.xenoRefGene.LENGTH0.6230.0070.630
cb1.xenoRefGene.LENGTH0.3980.0000.398
cb3.xenoRefGene.LENGTH0.5200.0270.548
ce2.geneSymbol.LENGTH0.0750.0010.074
ce2.geneid.LENGTH0.0670.0000.066
ce2.refGene.LENGTH0.0690.0000.070
ce4.geneSymbol.LENGTH0.0710.0000.071
ce4.refGene.LENGTH0.0580.0000.058
ce4.xenoRefGene.LENGTH0.080.000.08
ce6.ensGene.LENGTH0.0890.0000.089
ce6.geneSymbol.LENGTH0.0670.0090.077
ce6.refGene.LENGTH0.0590.0020.060
ce6.xenoRefGene.LENGTH0.0760.0030.080
ci1.geneSymbol.LENGTH0.0060.0010.005
ci1.refGene.LENGTH0.0010.0030.005
ci1.xenoRefGene.LENGTH0.1600.0050.165
ci2.ensGene.LENGTH0.0610.0070.069
ci2.geneSymbol.LENGTH0.0040.0000.005
ci2.refGene.LENGTH0.0040.0000.004
ci2.xenoRefGene.LENGTH0.3510.0000.351
danRer3.ensGene.LENGTH0.1310.0080.139
danRer3.geneSymbol.LENGTH0.0520.0040.056
danRer3.refGene.LENGTH0.0430.0010.044
danRer4.ensGene.LENGTH0.2600.0070.267
danRer4.geneSymbol.LENGTH0.0460.0000.045
danRer4.genscan.LENGTH0.0520.0000.052
danRer4.nscanGene.LENGTH0.0770.0000.077
danRer4.refGene.LENGTH0.0360.0040.040
danRer5.ensGene.LENGTH0.0920.0040.096
danRer5.geneSymbol.LENGTH0.0410.0000.041
danRer5.refGene.LENGTH0.0360.0000.036
danRer5.vegaGene.LENGTH0.0440.0000.044
danRer5.vegaPseudoGene.LENGTH0.0020.0000.003
danRer6.ensGene.LENGTH0.0930.0000.093
danRer6.geneSymbol.LENGTH0.0430.0000.043
danRer6.refGene.LENGTH0.0370.0000.037
danRer6.xenoRefGene.LENGTH0.4030.0000.403
dm1.geneSymbol.LENGTH0.9500.6121.561
dm1.genscan.LENGTH0.0210.0000.021
dm1.refGene.LENGTH0.0460.0000.045
dm2.geneSymbol.LENGTH0.0540.0000.054
dm2.geneid.LENGTH0.0300.0000.029
dm2.genscan.LENGTH0.0190.0000.018
dm2.nscanGene.LENGTH0.0360.0000.037
dm2.refGene.LENGTH0.0460.0020.050
dm3.geneSymbol.LENGTH0.0550.0040.059
dm3.nscanPasaGene.LENGTH0.0460.0010.047
dm3.refGene.LENGTH0.060.000.06
dp2.genscan.LENGTH0.0280.0000.027
dp2.xenoRefGene.LENGTH0.1610.0000.161
dp3.geneid.LENGTH0.030.000.03
dp3.genscan.LENGTH0.020.000.02
dp3.xenoRefGene.LENGTH0.0820.0040.087
droAna1.geneid.LENGTH0.0530.0000.052
droAna1.genscan.LENGTH0.0180.0040.022
droAna1.xenoRefGene.LENGTH0.1430.0120.156
droAna2.genscan.LENGTH0.0410.0000.041
droAna2.xenoRefGene.LENGTH0.2110.0000.211
droEre1.genscan.LENGTH0.0230.0000.022
droEre1.xenoRefGene.LENGTH0.1950.0080.203
droGri1.genscan.LENGTH0.0350.0000.036
droGri1.xenoRefGene.LENGTH0.2090.0040.213
droMoj1.geneid.LENGTH0.1010.0000.101
droMoj1.genscan.LENGTH0.0490.0040.053
droMoj1.xenoRefGene.LENGTH0.1680.0040.173
droMoj2.genscan.LENGTH0.0260.0040.030
droMoj2.xenoRefGene.LENGTH0.2140.0000.214
droPer1.genscan.LENGTH0.0320.0000.032
droPer1.xenoRefGene.LENGTH0.2150.0000.215
droSec1.genscan.LENGTH0.0260.0000.025
droSec1.xenoRefGene.LENGTH0.2210.0040.225
droSim1.geneid.LENGTH0.0260.0040.030
droSim1.genscan.LENGTH0.020.000.02
droSim1.xenoRefGene.LENGTH0.1730.0000.173
droVir1.geneid.LENGTH0.0880.0000.088
droVir1.genscan.LENGTH0.0370.0000.037
droVir1.xenoRefGene.LENGTH0.2300.0200.249
droVir2.genscan.LENGTH0.030.000.03
droVir2.xenoRefGene.LENGTH0.2050.0000.205
droYak1.geneid.LENGTH0.0380.0000.038
droYak1.genscan.LENGTH0.0290.0000.029
droYak1.xenoRefGene.LENGTH0.170.000.17
droYak2.genscan.LENGTH0.0210.0000.021
droYak2.xenoRefGene.LENGTH0.1890.0000.189
equCab1.geneSymbol.LENGTH0.0000.0040.004
equCab1.geneid.LENGTH0.0640.0000.064
equCab1.nscanGene.LENGTH0.030.000.03
equCab1.refGene.LENGTH0.0040.0000.004
equCab1.sgpGene.LENGTH0.0490.0000.049
equCab2.ensGene.LENGTH0.0740.0000.074
equCab2.geneSymbol.LENGTH0.0050.0000.005
equCab2.nscanGene.LENGTH0.0390.0000.039
equCab2.refGene.LENGTH0.0060.0000.006
equCab2.xenoRefGene.LENGTH0.4040.0000.404
felCat3.ensGene.LENGTH0.0870.0080.095
felCat3.geneSymbol.LENGTH0.0030.0000.003
felCat3.geneid.LENGTH0.3960.0080.403
felCat3.genscan.LENGTH0.0960.0000.096
felCat3.nscanGene.LENGTH0.0740.0000.074
felCat3.refGene.LENGTH0.0030.0000.003
felCat3.sgpGene.LENGTH0.290.000.29
felCat3.xenoRefGene.LENGTH0.7780.0080.786
fr1.ensGene.LENGTH0.060.000.06
fr1.genscan.LENGTH0.0470.0000.047
fr2.ensGene.LENGTH0.1150.0000.115
galGal2.ensGene.LENGTH0.0540.0000.054
galGal2.geneSymbol.LENGTH0.0150.0000.015
galGal2.geneid.LENGTH0.0360.0000.036
galGal2.genscan.LENGTH0.0460.0000.046
galGal2.refGene.LENGTH0.0130.0000.014
galGal2.sgpGene.LENGTH0.0390.0000.039
galGal3.ensGene.LENGTH0.060.000.06
galGal3.geneSymbol.LENGTH0.0130.0000.013
galGal3.genscan.LENGTH0.0380.0000.039
galGal3.nscanGene.LENGTH0.0560.0040.059
galGal3.refGene.LENGTH0.0130.0000.012
galGal3.xenoRefGene.LENGTH0.3840.0080.392
gasAcu1.ensGene.LENGTH0.0790.0000.078
gasAcu1.nscanGene.LENGTH0.2870.0040.291
hg16.acembly.LENGTH0.2560.0040.260
hg16.ensGene.LENGTH0.0520.0000.052
hg16.exoniphy.LENGTH0.2010.0000.201
hg16.geneSymbol.LENGTH0.0830.0000.083
hg16.geneid.LENGTH0.0430.0000.044
hg16.genscan.LENGTH0.0510.0000.051
hg16.knownGene.LENGTH0.0950.0040.099
hg16.refGene.LENGTH0.0820.0000.081
hg16.sgpGene.LENGTH0.0440.0000.045
hg17.acembly.LENGTH0.3230.0040.327
hg17.acescan.LENGTH0.0090.0000.009
hg17.ccdsGene.LENGTH0.0170.0040.020
hg17.ensGene.LENGTH0.0860.0000.086
hg17.exoniphy.LENGTH0.3430.0000.343
hg17.geneSymbol.LENGTH0.0820.0000.081
hg17.geneid.LENGTH0.0580.0040.062
hg17.genscan.LENGTH0.0520.0000.053
hg17.knownGene.LENGTH0.0890.0000.089
hg17.refGene.LENGTH0.0770.0000.077
hg17.sgpGene.LENGTH0.0520.0040.055
hg17.vegaGene.LENGTH0.0370.0000.037
hg17.vegaPseudoGene.LENGTH0.0160.0000.016
hg17.xenoRefGene.LENGTH0.1780.0000.178
hg18.acembly.LENGTH0.6060.0000.607
hg18.acescan.LENGTH0.0080.0000.008
hg18.ccdsGene.LENGTH0.0270.0000.027
hg18.ensGene.LENGTH0.1470.0000.148
hg18.exoniphy.LENGTH0.3710.0000.371
hg18.geneSymbol.LENGTH0.0920.0000.092
hg18.geneid.LENGTH0.0690.0000.069
hg18.genscan.LENGTH0.0570.0000.057
hg18.knownGene.LENGTH0.1340.0000.135
hg18.knownGeneOld3.LENGTH0.0660.0000.066
hg18.refGene.LENGTH0.0820.0000.082
hg18.sgpGene.LENGTH0.0670.0000.067
hg18.sibGene.LENGTH1.8060.0041.810
hg18.xenoRefGene.LENGTH0.2550.0000.255
hg19.ccdsGene.LENGTH0.0320.0000.032
hg19.ensGene.LENGTH0.1990.0040.202
hg19.exoniphy.LENGTH0.2930.0000.293
hg19.geneSymbol.LENGTH0.0810.0000.082
hg19.knownGene.LENGTH0.1400.0000.141
hg19.nscanGene.LENGTH0.1150.0040.119
hg19.refGene.LENGTH0.0770.0000.076
hg19.xenoRefGene.LENGTH0.2660.0040.270
loxAfr3.xenoRefGene.LENGTH0.5220.0000.522
mm7.ensGene.LENGTH0.0830.0000.083
mm7.geneSymbol.LENGTH0.0620.0040.067
mm7.geneid.LENGTH0.0500.0080.059
mm7.genscan.LENGTH0.0490.0000.050
mm7.knownGene.LENGTH0.0740.0000.073
mm7.refGene.LENGTH0.0660.0000.066
mm7.sgpGene.LENGTH0.0560.0000.057
mm7.xenoRefGene.LENGTH0.2530.0080.262
mm8.ccdsGene.LENGTH0.020.000.02
mm8.ensGene.LENGTH0.0660.0040.069
mm8.geneSymbol.LENGTH0.0810.0000.080
mm8.geneid.LENGTH0.0600.0000.059
mm8.genscan.LENGTH0.0460.0000.046
mm8.knownGene.LENGTH0.0740.0000.074
mm8.nscanGene.LENGTH0.0470.0000.047
mm8.refGene.LENGTH0.0670.0000.067
mm8.sgpGene.LENGTH0.0450.0040.049
mm8.sibGene.LENGTH0.1950.0000.194
mm8.xenoRefGene.LENGTH0.2650.0000.265
mm9.acembly.LENGTH0.2450.0040.250
mm9.ccdsGene.LENGTH0.0240.0000.025
mm9.ensGene.LENGTH0.1190.0000.120
mm9.exoniphy.LENGTH0.6000.0000.599
mm9.geneSymbol.LENGTH0.0760.0000.075
mm9.geneid.LENGTH0.0660.0000.066
mm9.genscan.LENGTH0.050.000.05
mm9.knownGene.LENGTH0.0850.0000.085
mm9.nscanGene.LENGTH0.050.000.05
mm9.refGene.LENGTH0.0620.0000.062
mm9.sgpGene.LENGTH0.0630.0000.063
mm9.xenoRefGene.LENGTH0.2540.0040.259
monDom1.genscan.LENGTH0.0490.0000.049
monDom4.ensGene.LENGTH0.0560.0000.055
monDom4.geneSymbol.LENGTH0.0030.0000.003
monDom4.genscan.LENGTH0.0440.0000.043
monDom4.nscanGene.LENGTH0.0450.0000.045
monDom4.refGene.LENGTH0.0030.0000.003
monDom4.xenoRefGene.LENGTH0.2520.0040.257
monDom5.ensGene.LENGTH0.0960.0000.095
monDom5.geneSymbol.LENGTH0.0030.0000.003
monDom5.genscan.LENGTH0.050.000.05
monDom5.nscanGene.LENGTH0.0950.0000.094
monDom5.refGene.LENGTH0.0030.0000.003
monDom5.xenoRefGene.LENGTH0.4570.0000.458
ornAna1.ensGene.LENGTH0.0770.0000.077
ornAna1.geneSymbol.LENGTH0.0020.0000.002
ornAna1.refGene.LENGTH0.0020.0000.002
ornAna1.xenoRefGene.LENGTH0.420.000.42
oryLat2.ensGene.LENGTH0.0630.0040.066
oryLat2.geneSymbol.LENGTH0.0030.0000.003
oryLat2.refGene.LENGTH0.0030.0000.003
oryLat2.xenoRefGene.LENGTH0.3930.0040.397
panTro1.ensGene.LENGTH0.0910.0040.095
panTro1.geneid.LENGTH0.0450.0000.045
panTro1.genscan.LENGTH0.0520.0000.052
panTro1.xenoRefGene.LENGTH0.2890.0000.289
panTro2.ensGene.LENGTH0.0880.0040.092
panTro2.geneSymbol.LENGTH0.0750.0000.075
panTro2.genscan.LENGTH0.0460.0000.046
panTro2.nscanGene.LENGTH0.0490.0000.049
panTro2.refGene.LENGTH0.0750.0000.075
panTro2.xenoRefGene.LENGTH0.3890.0000.389
petMar1.xenoRefGene.LENGTH0.1940.0010.195
ponAbe2.ensGene.LENGTH0.0670.0030.070
ponAbe2.geneSymbol.LENGTH0.0090.0000.009
ponAbe2.genscan.LENGTH0.0510.0000.051
ponAbe2.nscanGene.LENGTH0.0490.0000.049
ponAbe2.refGene.LENGTH0.0090.0000.009
ponAbe2.xenoRefGene.LENGTH0.4940.0080.502
priPac1.xenoRefGene.LENGTH0.2910.0000.292
rheMac2.ensGene.LENGTH0.1110.0000.111
rheMac2.geneSymbol.LENGTH0.0050.0000.005
rheMac2.geneid.LENGTH0.0630.0000.064
rheMac2.nscanGene.LENGTH0.0510.0000.051
rheMac2.refGene.LENGTH0.0040.0000.005
rheMac2.sgpGene.LENGTH0.0590.0000.059
rheMac2.xenoRefGene.LENGTH0.7730.0040.777
rn3.ensGene.LENGTH0.0850.0000.085
rn3.geneSymbol.LENGTH0.0470.0000.047
rn3.geneid.LENGTH0.0460.0000.047
rn3.genscan.LENGTH0.0540.0000.054
rn3.knownGene.LENGTH0.020.000.02
rn3.nscanGene.LENGTH0.0490.0040.053
rn3.refGene.LENGTH0.0490.0000.049
rn3.sgpGene.LENGTH0.0520.0000.052
rn3.xenoRefGene.LENGTH0.3870.0040.391
rn4.ensGene.LENGTH0.0950.0000.094
rn4.geneSymbol.LENGTH0.0390.0000.039
rn4.geneid.LENGTH0.0680.0000.068
rn4.genscan.LENGTH0.0470.0040.051
rn4.knownGene.LENGTH0.020.000.02
rn4.nscanGene.LENGTH0.0430.0000.043
rn4.refGene.LENGTH0.0380.0000.038
rn4.sgpGene.LENGTH0.0600.0040.064
rn4.xenoRefGene.LENGTH0.2390.0000.239
sacCer1.ensGene.LENGTH0.0160.0000.017
sacCer2.ensGene.LENGTH0.0160.0000.017
strPur1.geneSymbol.LENGTH0.0040.0000.004
strPur1.genscan.LENGTH0.0590.0000.058
strPur1.refGene.LENGTH0.0040.0000.004
strPur1.xenoRefGene.LENGTH0.3750.0000.375
strPur2.geneSymbol.LENGTH0.0030.0000.004
strPur2.genscan.LENGTH0.0840.0000.084
strPur2.refGene.LENGTH0.0030.0000.003
strPur2.xenoRefGene.LENGTH0.4440.0120.455
supportedGeneIDs 0.108 0.00014.140
supportedGenomes0.1620.0081.467
taeGut1.ensGene.LENGTH0.0600.0000.061
taeGut1.geneSymbol.LENGTH0.0020.0000.002
taeGut1.genscan.LENGTH0.0310.0000.032
taeGut1.nscanGene.LENGTH0.0240.0000.023
taeGut1.refGene.LENGTH0.0030.0000.002
taeGut1.xenoRefGene.LENGTH0.4010.0000.401
tetNig1.ensGene.LENGTH0.0750.0000.074
tetNig1.geneid.LENGTH0.0600.0080.068
tetNig1.genscan.LENGTH0.0440.0000.044
tetNig1.nscanGene.LENGTH0.0620.0000.061
tetNig2.ensGene.LENGTH0.0610.0000.060
unfactor0.0040.0000.004
xenTro1.genscan.LENGTH0.0770.0000.076
xenTro2.ensGene.LENGTH0.0720.0000.071
xenTro2.geneSymbol.LENGTH0.0230.0040.026
xenTro2.genscan.LENGTH0.0610.0000.061
xenTro2.refGene.LENGTH0.0190.0040.024