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INSTALL report for nuCpos on tokay1

This page was generated on 2021-01-19 11:55:56 -0500 (Tue, 19 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE nuCpos PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1240/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
nuCpos 1.8.0
Hiroaki Kato
Snapshot Date: 2021-01-18 14:42:24 -0500 (Mon, 18 Jan 2021)
URL: https://git.bioconductor.org/packages/nuCpos
Branch: RELEASE_3_12
Last Commit: b77ccdf
Last Changed Date: 2020-10-27 11:37:59 -0500 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.5 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: nuCpos
Version: 1.8.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/nuCpos_1.8.0.tar.gz && rm -rf nuCpos.buildbin-libdir && mkdir nuCpos.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nuCpos.buildbin-libdir nuCpos_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL nuCpos_1.8.0.zip && rm nuCpos_1.8.0.tar.gz nuCpos_1.8.0.zip
StartedAt: 2021-01-18 16:40:34 -0500 (Mon, 18 Jan 2021)
EndedAt: 2021-01-18 16:41:09 -0500 (Mon, 18 Jan 2021)
EllapsedTime: 35.8 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.12/bioc/src/contrib/nuCpos_1.8.0.tar.gz && rm -rf nuCpos.buildbin-libdir && mkdir nuCpos.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nuCpos.buildbin-libdir nuCpos_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL nuCpos_1.8.0.zip && rm nuCpos_1.8.0.tar.gz nuCpos_1.8.0.zip
###
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100  835k  100  835k    0     0  20.3M      0 --:--:-- --:--:-- --:--:-- 22.6M

install for i386

* installing *source* package 'nuCpos' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gfortran  -fno-optimize-sibling-calls    -O2  -mfpmath=sse -msse2 -mstackrealign -c  HBA_3.f90 -o HBA_3.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_nuCpos.c -o R_init_nuCpos.o
"C:/rtools40/mingw32/bin/"gfortran  -fno-optimize-sibling-calls    -O2  -mfpmath=sse -msse2 -mstackrealign -c  localHBA_3.f90 -o localHBA_3.o
"C:/rtools40/mingw32/bin/"gfortran  -fno-optimize-sibling-calls    -O2  -mfpmath=sse -msse2 -mstackrealign -c  nuCpos2_1.f90 -o nuCpos2_1.o
"C:/rtools40/mingw32/bin/"gfortran  -fno-optimize-sibling-calls    -O2  -mfpmath=sse -msse2 -mstackrealign -c  nuCpos2_2.f90 -o nuCpos2_2.o
"C:/rtools40/mingw32/bin/"gfortran  -fno-optimize-sibling-calls    -O2  -mfpmath=sse -msse2 -mstackrealign -c  nuCpos_1.f90 -o nuCpos_1.o
"C:/rtools40/mingw32/bin/"gfortran  -fno-optimize-sibling-calls    -O2  -mfpmath=sse -msse2 -mstackrealign -c  nuCpos_2.f90 -o nuCpos_2.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o nuCpos.dll tmp.def HBA_3.o R_init_nuCpos.o localHBA_3.o nuCpos2_1.o nuCpos2_2.o nuCpos_1.o nuCpos_2.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/nuCpos.buildbin-libdir/00LOCK-nuCpos/00new/nuCpos/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'nuCpos'
    finding HTML links ... done
    HBA                                     html  
    localHBA                                html  
    mutNuCpos                               html  
    nuCpos-package                          html  
    predNuCpos                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'nuCpos' ...
** libs
"C:/rtools40/mingw64/bin/"gfortran  -fno-optimize-sibling-calls    -O2  -mfpmath=sse -msse2 -mstackrealign -c  HBA_3.f90 -o HBA_3.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_nuCpos.c -o R_init_nuCpos.o
"C:/rtools40/mingw64/bin/"gfortran  -fno-optimize-sibling-calls    -O2  -mfpmath=sse -msse2 -mstackrealign -c  localHBA_3.f90 -o localHBA_3.o
"C:/rtools40/mingw64/bin/"gfortran  -fno-optimize-sibling-calls    -O2  -mfpmath=sse -msse2 -mstackrealign -c  nuCpos2_1.f90 -o nuCpos2_1.o
"C:/rtools40/mingw64/bin/"gfortran  -fno-optimize-sibling-calls    -O2  -mfpmath=sse -msse2 -mstackrealign -c  nuCpos2_2.f90 -o nuCpos2_2.o
"C:/rtools40/mingw64/bin/"gfortran  -fno-optimize-sibling-calls    -O2  -mfpmath=sse -msse2 -mstackrealign -c  nuCpos_1.f90 -o nuCpos_1.o
"C:/rtools40/mingw64/bin/"gfortran  -fno-optimize-sibling-calls    -O2  -mfpmath=sse -msse2 -mstackrealign -c  nuCpos_2.f90 -o nuCpos_2.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o nuCpos.dll tmp.def HBA_3.o R_init_nuCpos.o localHBA_3.o nuCpos2_1.o nuCpos2_2.o nuCpos_1.o nuCpos_2.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/nuCpos.buildbin-libdir/nuCpos/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'nuCpos' as nuCpos_1.8.0.zip
* DONE (nuCpos)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'nuCpos' successfully unpacked and MD5 sums checked