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BUILD BIN report for nuCpos on merida1

This page was generated on 2021-01-19 11:58:01 -0500 (Tue, 19 Jan 2021).

TO THE DEVELOPERS/MAINTAINERS OF THE nuCpos PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1240/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
nuCpos 1.8.0
Hiroaki Kato
Snapshot Date: 2021-01-18 14:42:24 -0500 (Mon, 18 Jan 2021)
URL: https://git.bioconductor.org/packages/nuCpos
Branch: RELEASE_3_12
Last Commit: b77ccdf
Last Changed Date: 2020-10-27 11:37:59 -0500 (Tue, 27 Oct 2020)
malbec1 Linux (Ubuntu 18.04.5 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
nebbiolo1 Linux (Ubuntu 20.04.1 LTS) / x86_64  OK  OK  OK 
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 macOS 10.14.6 Mojave / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: nuCpos
Version: 1.8.0
Command: rm -rf nuCpos.buildbin-libdir && mkdir nuCpos.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh nuCpos_1.8.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R nuCpos.buildbin-libdir
StartedAt: 2021-01-19 09:31:19 -0500 (Tue, 19 Jan 2021)
EndedAt: 2021-01-19 09:32:26 -0500 (Tue, 19 Jan 2021)
EllapsedTime: 67.0 seconds
RetCode: 0
Status:  OK 
PackageFile: nuCpos_1.8.0.tgz
PackageFileSize: 1.232 MiB

Command output

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### Running command:
###
###   rm -rf nuCpos.buildbin-libdir && mkdir nuCpos.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh nuCpos_1.8.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R nuCpos.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=nuCpos.buildbin-libdir nuCpos_1.8.0.tar.gz'
>>>>>>> 

* installing *source* package ‘nuCpos’ ...
** using staged installation
** libs
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c  HBA_3.f90 -o HBA_3.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_init_nuCpos.c -o R_init_nuCpos.o
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c  localHBA_3.f90 -o localHBA_3.o
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c  nuCpos2_1.f90 -o nuCpos2_1.o
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c  nuCpos2_2.f90 -o nuCpos2_2.o
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c  nuCpos_1.f90 -o nuCpos_1.o
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c  nuCpos_2.f90 -o nuCpos_2.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o nuCpos.so HBA_3.o R_init_nuCpos.o localHBA_3.o nuCpos2_1.o nuCpos2_2.o nuCpos_1.o nuCpos_2.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.12-bioc/meat/nuCpos.buildbin-libdir/00LOCK-nuCpos/00new/nuCpos/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nuCpos)


>>>>>>> 
>>>>>>> FIXING LINKS FOR nuCpos.buildbin-libdir/nuCpos/libs/nuCpos.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "nuCpos.buildbin-libdir/nuCpos/libs/nuCpos.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "nuCpos.buildbin-libdir/nuCpos/libs/nuCpos.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "nuCpos.buildbin-libdir/nuCpos/libs/nuCpos.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "nuCpos.buildbin-libdir/nuCpos/libs/nuCpos.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "nuCpos.buildbin-libdir/nuCpos/libs/nuCpos.so"